Wall clock time and date at job start Mon Mar 30 2020 01:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47395 * 2 1 4 4 N 1.31961 * 120.60798 * 270.26340 * 3 2 1 5 5 C 1.31991 * 121.08629 * 180.30946 * 4 3 2 6 6 N 1.32015 * 122.36285 * 359.67994 * 5 4 3 7 7 C 1.31939 * 121.08358 * 0.02562 * 6 5 4 8 8 C 1.41061 * 120.61357 * 89.99815 * 3 2 1 9 9 C 1.41429 * 121.04479 * 0.02562 * 8 3 2 10 10 H 1.07988 * 119.99909 * 334.63793 * 9 8 3 11 11 C 1.39955 * 119.99587 * 154.63364 * 9 8 3 12 12 N 1.30818 * 120.00679 * 334.88290 * 11 9 8 13 13 Si 1.86804 * 119.99770 * 154.88022 * 11 9 8 14 14 H 1.48497 * 109.47475 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47081 * 300.00203 * 13 11 9 16 16 H 1.48506 * 109.46695 * 59.99985 * 13 11 9 17 17 H 1.09000 * 109.46931 * 300.00675 * 1 2 3 18 18 H 1.09002 * 109.47032 * 60.00149 * 1 2 3 19 19 H 1.08998 * 109.47534 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47577 * 239.99715 * 2 1 3 21 21 H 1.09002 * 109.47032 * 119.99851 * 2 1 3 22 22 H 1.08000 * 118.82131 * 179.69533 * 5 4 3 23 23 H 1.08001 * 120.60835 * 179.97438 * 7 6 5 24 24 H 0.97002 * 119.99923 * 354.22626 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2514 2.0560 -1.1357 5 6 2.6972 3.2983 -1.1468 6 7 2.9408 3.9716 -0.0377 7 6 2.7474 3.4249 1.1475 8 6 2.2718 2.0981 1.2140 9 6 2.0484 1.4649 2.4588 10 1 1.3377 0.6553 2.5329 11 6 2.7487 1.8876 3.5944 12 7 3.9086 2.4787 3.4655 13 14 2.0269 1.6080 5.2945 14 1 2.9570 2.1426 6.3213 15 1 0.7202 2.3056 5.3984 16 1 1.8301 0.1527 5.5154 17 1 -0.3633 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5138 0.8900 22 1 2.8685 3.7816 -2.0973 23 1 2.9496 3.9826 2.0499 24 1 4.3224 2.5493 2.5910 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213646971.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:31 Heat of formation + Delta-G solvation = -6.209199 kcal Electronic energy + Delta-G solvation = -10265.022812 eV Core-core repulsion = 8369.450308 eV Total energy + Delta-G solvation = -1895.572503 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.18604 -36.54917 -35.59723 -32.89218 -31.27352 -27.72682 -25.51655 -24.02414 -22.39087 -19.97911 -18.22397 -17.36044 -16.17646 -15.53279 -15.32555 -14.95196 -14.45751 -13.99409 -13.92572 -13.20447 -12.90989 -12.47004 -12.30116 -11.95494 -11.89862 -11.31325 -11.11031 -10.96530 -10.09378 -9.80743 -9.32756 -6.67405 0.56590 0.62887 1.54240 1.65438 1.83335 2.29181 2.61366 3.43690 3.68133 3.84761 4.03951 4.42229 4.53750 4.60465 4.76339 4.95336 5.04452 5.17899 5.34655 5.40027 5.52734 5.71988 5.83732 6.24871 6.57010 6.78177 7.73854 7.81964 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.042766 B = 0.017752 C = 0.013376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.567817 B = 1576.865340 C = 2092.816417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.047 4.047 3 C 0.038 3.962 4 N -0.500 5.500 5 C 0.105 3.895 6 N -0.508 5.508 7 C -0.011 4.011 8 C -0.021 4.021 9 C -0.493 4.493 10 H 0.102 0.898 11 C 0.003 3.997 12 N -0.797 5.797 13 Si 1.121 2.879 14 H -0.274 1.274 15 H -0.261 1.261 16 H -0.248 1.248 17 H 0.045 0.955 18 H 0.042 0.958 19 H 0.085 0.915 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.186 0.814 23 H 0.133 0.867 24 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.684 -4.901 1.932 7.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C -0.115 4.115 4 N -0.212 5.212 5 C -0.177 4.177 6 N -0.221 5.221 7 C -0.180 4.180 8 C -0.028 4.028 9 C -0.521 4.521 10 H 0.120 0.880 11 C -0.216 4.216 12 N -0.418 5.418 13 Si 0.936 3.064 14 H -0.199 1.199 15 H -0.185 1.185 16 H -0.171 1.171 17 H 0.064 0.936 18 H 0.061 0.939 19 H 0.104 0.896 20 H 0.089 0.911 21 H 0.095 0.905 22 H 0.203 0.797 23 H 0.150 0.850 24 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.175 -4.080 2.545 6.368 hybrid contribution 0.054 -0.120 -1.186 1.193 sum -4.121 -4.200 1.359 6.039 Atomic orbital electron populations 1.21596 0.93729 1.02543 1.00943 1.20138 0.96830 0.89309 1.02260 1.22052 1.04168 0.97698 0.87609 1.67554 1.11348 1.10800 1.31538 1.24082 1.07329 0.90052 0.96248 1.67653 1.14767 1.39792 0.99863 1.22957 1.07315 0.93438 0.94335 1.19431 0.93962 0.93493 0.95915 1.20880 1.21307 1.17192 0.92695 0.87981 1.28775 0.93116 0.89906 1.09763 1.70608 1.13347 1.27947 1.29885 0.82960 0.76116 0.79280 0.68037 1.19877 1.18531 1.17123 0.93623 0.93876 0.89648 0.91092 0.90463 0.79689 0.85004 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.89 71.98 0.71 -3.59 14 2 C -0.05 -1.85 5.72 29.85 0.17 -1.67 14 3 C 0.04 1.85 6.15 43.23 0.27 2.11 14 4 N -0.50 -24.71 10.35 -186.11 -1.93 -26.64 14 5 C 0.10 5.15 12.26 180.76 2.22 7.37 14 6 N -0.51 -26.79 10.41 -197.98 -2.06 -28.85 14 7 C -0.01 -0.59 9.24 85.38 0.79 0.20 14 8 C -0.02 -1.09 5.32 -21.10 -0.11 -1.20 14 9 C -0.49 -23.82 8.16 23.47 0.19 -23.62 14 10 H 0.10 4.54 6.93 -2.92 -0.02 4.52 14 11 C 0.00 0.13 4.99 85.26 0.43 0.56 14 12 N -0.80 -40.52 12.35 21.83 0.27 -40.25 14 13 Si 1.12 38.28 30.00 68.60 2.06 40.33 14 14 H -0.27 -9.46 7.11 99.48 0.71 -8.75 14 15 H -0.26 -8.45 7.11 99.48 0.71 -7.74 14 16 H -0.25 -7.49 7.11 99.48 0.71 -6.78 14 17 H 0.04 1.58 8.03 -2.39 -0.02 1.57 14 18 H 0.04 1.46 8.14 -2.39 -0.02 1.44 14 19 H 0.08 2.19 8.14 -2.39 -0.02 2.17 14 20 H 0.07 2.59 8.14 -2.39 -0.02 2.57 14 21 H 0.08 2.96 6.89 -2.39 -0.02 2.94 14 22 H 0.19 7.75 8.06 -2.91 -0.02 7.72 14 23 H 0.13 7.23 6.58 -2.91 -0.02 7.21 14 24 H 0.28 15.33 6.65 -92.71 -0.62 14.72 14 Total: -1.00 -58.03 213.74 4.35 -53.68 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 1.35 Total: 21.58 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 4.66 Total: -19.86 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -3.72 Total: -95.74 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.06 Total: 40.33 kcal Total: -58.03 4.35 -53.68 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213646971.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.469 kcal (2) G-P(sol) polarization free energy of solvation -58.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds