Wall clock time and date at job start Mon Mar 30 2020 01:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31952 * 120.60948 * 2 1 4 4 C 1.31994 * 121.08020 * 180.29245 * 3 2 1 5 5 N 1.31995 * 122.37312 * 359.73639 * 4 3 2 6 6 C 1.31955 * 121.08184 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.61127 * 180.02562 * 6 5 4 8 8 C 1.41079 * 120.60959 * 179.75156 * 2 1 3 9 9 C 1.41419 * 121.04859 * 359.97438 * 8 2 1 10 10 H 1.08000 * 119.99872 * 133.84303 * 9 8 2 11 11 C 1.39952 * 120.00249 * 313.56507 * 9 8 2 12 12 N 1.30827 * 119.99677 * 340.49849 * 11 9 8 13 13 Si 1.86793 * 120.00310 * 160.49930 * 11 9 8 14 14 H 1.48497 * 109.47183 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47398 * 120.00115 * 13 11 9 16 16 H 1.48504 * 109.47160 * 239.99914 * 13 11 9 17 17 H 1.08996 * 109.47197 * 271.69178 * 1 2 3 18 18 H 1.08997 * 109.46821 * 31.69660 * 1 2 3 19 19 H 1.09005 * 109.46857 * 151.69388 * 1 2 3 20 20 H 1.08004 * 118.81311 * 179.72291 * 4 3 2 21 21 H 1.08994 * 109.47260 * 269.98067 * 7 6 5 22 22 H 1.09001 * 109.46893 * 29.98252 * 7 6 5 23 23 H 1.09003 * 109.47217 * 149.97762 * 7 6 5 24 24 H 0.97002 * 119.99952 * 185.15491 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1789 1.1357 0.0000 4 6 3.4988 1.1465 -0.0058 5 7 4.2147 0.0376 -0.0067 6 6 3.6347 -1.1477 -0.0013 7 6 4.4624 -2.4070 -0.0018 8 6 2.2254 -1.2142 0.0053 9 6 1.5540 -2.4589 0.0112 10 1 1.8677 -3.2447 -0.6599 11 6 0.4870 -2.6742 0.8908 12 7 0.3449 -1.9133 1.9455 13 14 -0.7343 -4.0481 0.5590 14 1 -0.3542 -4.7576 -0.6889 15 1 -0.7245 -5.0043 1.6952 16 1 -2.0955 -3.4744 0.4067 17 1 -0.3633 0.0303 1.0272 18 1 -0.3633 0.8744 -0.5399 19 1 -0.3633 -0.9048 -0.4873 20 1 4.0115 2.0971 -0.0101 21 1 4.6572 -2.7133 -1.0295 22 1 5.4080 -2.2204 0.5073 23 1 3.9206 -3.1981 0.5167 24 1 -0.3492 -2.1084 2.5944 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213647284.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:12 Heat of formation + Delta-G solvation = 4.806333 kcal Electronic energy + Delta-G solvation = -10394.722107 eV Core-core repulsion = 8499.627273 eV Total energy + Delta-G solvation = -1895.094834 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.11237 -36.28446 -35.04364 -32.97800 -29.71686 -29.19278 -26.73665 -23.73173 -21.96173 -19.34906 -17.89372 -16.91958 -16.69851 -15.54761 -15.17001 -14.06764 -13.85496 -13.74735 -13.60259 -13.19671 -13.06976 -12.95678 -12.79321 -12.46361 -12.13770 -11.24789 -10.93810 -10.68741 -9.71034 -9.39441 -8.66164 -6.49592 0.66907 0.75360 1.44766 1.48509 1.58986 2.23149 2.74856 3.46816 3.76499 3.85269 4.18618 4.73872 4.77741 4.86607 4.92933 5.02319 5.07956 5.22371 5.28206 5.47135 5.69942 5.88523 6.31045 6.43009 6.77081 6.96698 7.81811 8.33992 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.051227 B = 0.018242 C = 0.014578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.458067 B = 1534.531079 C = 1920.235786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.074 3.926 3 N -0.529 5.529 4 C 0.150 3.850 5 N -0.524 5.524 6 C 0.045 3.955 7 C -0.067 4.067 8 C 0.001 3.999 9 C -0.476 4.476 10 H 0.093 0.907 11 C 0.048 3.952 12 N -0.824 5.824 13 Si 0.974 3.026 14 H -0.254 1.254 15 H -0.269 1.269 16 H -0.264 1.264 17 H 0.066 0.934 18 H 0.054 0.946 19 H 0.066 0.934 20 H 0.191 0.809 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 -3.456 -1.888 4.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.075 4.075 3 N -0.244 5.244 4 C -0.134 4.134 5 N -0.239 5.239 6 C -0.104 4.104 7 C -0.125 4.125 8 C -0.005 4.005 9 C -0.506 4.506 10 H 0.111 0.889 11 C -0.168 4.168 12 N -0.450 5.450 13 Si 0.795 3.205 14 H -0.178 1.178 15 H -0.194 1.194 16 H -0.189 1.189 17 H 0.085 0.915 18 H 0.073 0.927 19 H 0.085 0.915 20 H 0.208 0.792 21 H 0.092 0.908 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.153 -2.459 -1.713 3.211 hybrid contribution -0.798 -0.956 0.202 1.261 sum -1.951 -3.415 -1.511 4.213 Atomic orbital electron populations 1.20349 0.88892 1.00742 1.01582 1.22126 0.97256 0.88231 0.99910 1.67626 1.10816 1.31957 1.14051 1.24301 0.86917 0.96611 1.05576 1.67639 1.42764 0.99490 1.14006 1.22459 0.92509 0.93717 1.01742 1.20320 0.97748 0.92190 1.02227 1.19222 0.92892 0.95718 0.92690 1.19453 1.13109 0.98352 1.19717 0.88947 1.26546 0.97692 0.99300 0.93231 1.69851 1.30271 1.36886 1.08030 0.85263 0.77850 0.77680 0.79701 1.17766 1.19406 1.18881 0.91538 0.92673 0.91504 0.79249 0.90768 0.91502 0.90749 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.71 8.51 71.24 0.61 -2.10 14 2 C 0.07 3.86 6.55 43.24 0.28 4.14 14 3 N -0.53 -27.31 10.35 -186.11 -1.93 -29.23 14 4 C 0.15 7.30 12.26 180.76 2.22 9.51 14 5 N -0.52 -26.07 10.35 -186.11 -1.93 -28.00 14 6 C 0.04 2.24 6.90 43.24 0.30 2.54 14 7 C -0.07 -2.71 9.83 71.23 0.70 -2.01 14 8 C 0.00 0.05 5.24 -21.10 -0.11 -0.06 14 9 C -0.48 -23.33 7.06 23.47 0.17 -23.16 14 10 H 0.09 4.30 7.87 -2.91 -0.02 4.28 14 11 C 0.05 2.21 3.54 85.26 0.30 2.51 14 12 N -0.82 -40.39 10.82 21.83 0.24 -40.15 14 13 Si 0.97 34.88 29.61 68.60 2.03 36.91 14 14 H -0.25 -8.85 7.11 99.48 0.71 -8.14 14 15 H -0.27 -9.37 7.11 99.48 0.71 -8.67 14 16 H -0.26 -9.18 7.11 99.48 0.71 -8.47 14 17 H 0.07 3.17 6.81 -2.39 -0.02 3.16 14 18 H 0.05 2.31 8.14 -2.39 -0.02 2.29 14 19 H 0.07 3.00 6.38 -2.38 -0.02 2.99 14 20 H 0.19 7.67 8.06 -2.91 -0.02 7.65 14 21 H 0.07 2.66 8.14 -2.39 -0.02 2.64 14 22 H 0.07 2.47 8.14 -2.39 -0.02 2.45 14 23 H 0.07 2.97 7.22 -2.39 -0.02 2.95 14 24 H 0.29 12.92 8.30 -92.71 -0.77 12.15 14 Total: -1.00 -57.90 211.41 4.07 -53.83 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.20 Total: 15.27 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 4.46 Total: -8.64 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -3.62 Total: -97.38 kcal Atomic # 14 Polarization: 34.88 SS G_CDS: 2.03 Total: 36.91 kcal Total: -57.90 4.07 -53.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213647284.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.639 kcal (2) G-P(sol) polarization free energy of solvation -57.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds