Wall clock time and date at job start Mon Mar 30 2020 01:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38694 * 119.27050 * 2 1 4 4 C 1.38003 * 119.61893 * 180.26071 * 3 2 1 5 5 C 1.41000 * 118.28740 * 359.45305 * 4 3 2 6 6 C 1.41016 * 120.70655 * 180.30158 * 5 4 3 7 7 H 1.08006 * 119.99610 * 204.87583 * 6 5 4 8 8 C 1.39942 * 120.00315 * 24.87933 * 6 5 4 9 9 N 1.30870 * 119.99994 * 14.51281 * 8 6 5 10 10 Si 1.86797 * 119.99996 * 194.51775 * 8 6 5 11 11 H 1.48500 * 109.47423 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47254 * 119.99965 * 10 8 6 13 13 H 1.48506 * 109.47288 * 239.99857 * 10 8 6 14 14 C 1.41712 * 118.58690 * 0.27161 * 5 4 3 15 15 N 1.38090 * 119.90769 * 179.97438 * 14 5 4 16 16 N 1.31959 * 119.27792 * 179.70038 * 2 1 3 17 17 H 1.09000 * 109.47160 * 270.30144 * 1 2 3 18 18 H 1.08999 * 109.47634 * 30.30068 * 1 2 3 19 19 H 1.09003 * 109.47175 * 150.30321 * 1 2 3 20 20 H 1.07997 * 120.18883 * 359.97438 * 3 2 1 21 21 H 1.08002 * 120.85700 * 179.72617 * 4 3 2 22 22 H 0.96998 * 120.00025 * 180.02562 * 9 8 6 23 23 H 0.97001 * 119.99387 * 0.02562 * 15 14 5 24 24 H 0.96993 * 120.00412 * 179.97438 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2099 0.0000 4 6 3.5651 1.2183 -0.0055 5 6 4.2409 -0.0192 0.0010 6 6 5.6501 -0.0702 0.0022 7 1 6.1594 -0.9396 -0.3867 8 6 6.3888 1.0057 0.5074 9 7 5.7979 1.9234 1.2295 10 14 8.2181 1.1320 0.1510 11 1 8.6413 -0.0231 -0.6808 12 1 8.4942 2.3956 -0.5786 13 1 8.9733 1.1237 1.4297 14 6 3.4737 -1.2107 0.0068 15 7 4.1074 -2.4376 0.0126 16 7 2.1523 -1.1510 0.0060 17 1 -0.3633 0.0054 1.0276 18 1 -0.3634 0.8872 -0.5185 19 1 -0.3634 -0.8927 -0.5091 20 1 1.6363 2.1400 -0.0004 21 1 4.1134 2.1487 -0.0100 22 1 6.3098 2.6694 1.5794 23 1 5.0764 -2.4829 0.0131 24 1 3.5837 -3.2540 0.0170 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238463499.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:49 Heat of formation + Delta-G solvation = -1.646476 kcal Electronic energy + Delta-G solvation = -10139.764078 eV Core-core repulsion = 8244.389429 eV Total energy + Delta-G solvation = -1895.374649 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.33067 -36.05698 -35.30599 -32.52276 -30.93372 -29.30647 -25.75620 -23.00245 -22.45905 -19.12514 -17.92789 -17.48370 -16.62340 -15.57432 -15.33293 -14.99397 -14.26229 -13.73829 -13.50100 -13.17073 -13.08678 -12.88385 -12.54236 -12.15177 -11.61379 -11.12867 -11.01453 -9.99704 -9.80826 -8.65837 -8.37529 -6.13905 0.90176 1.21933 1.41334 1.51706 1.55707 2.23096 2.81481 3.22709 3.78354 4.31425 4.53440 4.74008 4.91816 5.00761 5.07197 5.23197 5.27589 5.45183 5.87970 5.89944 6.14268 6.48295 6.77606 6.88148 7.05871 7.20401 7.97750 8.40647 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.064236 B = 0.014068 C = 0.011867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.791131 B = 1989.811631 C = 2358.868352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.021 3.979 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.012 4.012 6 C -0.481 4.481 7 H 0.084 0.916 8 C 0.029 3.971 9 N -0.836 5.836 10 Si 0.985 3.015 11 H -0.254 1.254 12 H -0.270 1.270 13 H -0.270 1.270 14 C 0.297 3.703 15 N -0.847 5.847 16 N -0.551 5.551 17 H 0.064 0.936 18 H 0.078 0.922 19 H 0.062 0.938 20 H 0.119 0.881 21 H 0.113 0.887 22 H 0.285 0.715 23 H 0.406 0.594 24 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -1.669 -1.666 2.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.114 4.114 3 C -0.224 4.224 4 C -0.172 4.172 5 C -0.020 4.020 6 C -0.512 4.512 7 H 0.102 0.898 8 C -0.184 4.184 9 N -0.464 5.464 10 Si 0.806 3.194 11 H -0.177 1.177 12 H -0.195 1.195 13 H -0.195 1.195 14 C 0.056 3.944 15 N -0.395 5.395 16 N -0.270 5.270 17 H 0.083 0.917 18 H 0.097 0.903 19 H 0.081 0.919 20 H 0.137 0.863 21 H 0.131 0.869 22 H 0.095 0.905 23 H 0.237 0.763 24 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.864 -2.131 -1.529 2.761 hybrid contribution 1.435 0.755 0.088 1.624 sum 0.571 -1.375 -1.441 2.072 Atomic orbital electron populations 1.20364 0.88041 1.02414 1.01875 1.20842 0.96895 0.87475 1.06158 1.21506 0.94814 0.98140 1.07978 1.21471 0.93302 0.98029 1.04419 1.18321 0.95006 0.91030 0.97602 1.19465 0.90862 1.03673 1.37193 0.89820 1.26715 1.05569 0.94107 0.91959 1.69883 1.40234 1.11004 1.25276 0.85108 0.76028 0.79356 0.78880 1.17749 1.19493 1.19506 1.18811 0.88214 0.87438 0.99916 1.41451 1.08840 1.03289 1.85919 1.66509 1.08305 1.30705 1.21523 0.91696 0.90338 0.91906 0.86321 0.86911 0.90456 0.76263 0.77626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.42 10.15 71.24 0.72 -1.70 14 2 C 0.02 0.96 6.79 42.65 0.29 1.25 14 3 C -0.20 -9.81 9.70 22.32 0.22 -9.59 14 4 C -0.15 -7.92 8.79 22.89 0.20 -7.72 14 5 C -0.01 -0.68 5.61 -21.06 -0.12 -0.80 14 6 C -0.48 -25.15 8.54 23.36 0.20 -24.95 14 7 H 0.08 4.05 6.67 -2.91 -0.02 4.03 14 8 C 0.03 1.47 5.23 85.25 0.45 1.92 14 9 N -0.84 -44.03 10.83 21.83 0.24 -43.80 14 10 Si 0.99 37.75 29.58 68.60 2.03 39.78 14 11 H -0.25 -9.32 7.11 99.48 0.71 -8.61 14 12 H -0.27 -10.11 7.11 99.48 0.71 -9.41 14 13 H -0.27 -10.02 7.11 99.48 0.71 -9.31 14 14 C 0.30 15.06 7.79 134.05 1.04 16.10 14 15 N -0.85 -35.00 8.97 -54.40 -0.49 -35.49 14 16 N -0.55 -27.40 10.27 -179.56 -1.84 -29.25 14 17 H 0.06 2.09 8.14 -2.39 -0.02 2.07 14 18 H 0.08 2.33 8.07 -2.39 -0.02 2.31 14 19 H 0.06 2.08 8.14 -2.39 -0.02 2.06 14 20 H 0.12 5.01 8.06 -2.91 -0.02 4.99 14 21 H 0.11 6.34 6.17 -2.91 -0.02 6.32 14 22 H 0.28 13.60 8.30 -92.71 -0.77 12.83 14 23 H 0.41 15.67 7.03 -92.71 -0.65 15.02 14 24 H 0.40 14.13 8.95 -92.71 -0.83 13.30 14 Total: -1.00 -61.33 213.09 2.69 -58.64 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.25 Total: 35.60 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 3.00 Total: -25.49 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -2.10 Total: -108.53 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -61.33 2.69 -58.64 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238463499.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.993 kcal (2) G-P(sol) polarization free energy of solvation -61.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds