Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.37690 * 125.08242 * 129.80411 * 3 2 1 5 5 C 1.35676 * 114.88314 * 180.26437 * 4 3 2 6 6 C 1.38822 * 114.53587 * 359.97438 * 5 4 3 7 7 C 1.39490 * 125.23320 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99787 * 353.35328 * 7 6 5 9 9 C 1.40411 * 120.00272 * 173.35027 * 7 6 5 10 10 N 1.30630 * 119.99923 * 6.56679 * 9 7 6 11 11 Si 1.86796 * 120.00296 * 186.56801 * 9 7 6 12 12 H 1.48497 * 109.47381 * 94.98599 * 11 9 7 13 13 H 1.48504 * 109.47236 * 214.98857 * 11 9 7 14 14 H 1.48504 * 109.47068 * 334.98741 * 11 9 7 15 15 S 1.75809 * 125.08602 * 310.10115 * 3 2 1 16 16 H 1.08000 * 122.55821 * 0.23908 * 4 3 2 17 17 H 1.07998 * 122.73576 * 179.97438 * 5 4 3 18 18 H 0.96994 * 119.99876 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3591 0.7223 -0.8656 5 6 4.6945 0.5647 -0.6847 6 6 5.0386 -0.2994 0.3458 7 6 6.3419 -0.6216 0.7244 8 1 7.1771 -0.2730 0.1353 9 6 6.5678 -1.3993 1.8715 10 7 5.5591 -1.9281 2.5112 11 14 8.3109 -1.6776 2.4829 12 1 8.6340 -0.6758 3.5303 13 1 8.4231 -3.0441 3.0533 14 1 9.2613 -1.5342 1.3508 15 16 3.5790 -0.9256 1.1004 16 1 2.9480 1.3644 -1.6305 17 1 5.4299 1.0704 -1.2928 18 1 5.7152 -2.4650 3.3038 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238550386.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = 11.645000 kcal Electronic energy + Delta-G solvation = -7821.857496 eV Core-core repulsion = 6136.260324 eV Total energy + Delta-G solvation = -1685.597173 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 179.010 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.05342 -37.01051 -35.75331 -31.21301 -27.69881 -24.38354 -20.87172 -20.31904 -18.27369 -16.64547 -16.11948 -15.21526 -14.59131 -14.23027 -14.10999 -13.70070 -13.44095 -13.02251 -12.76272 -12.55995 -11.94405 -11.80603 -11.32442 -10.93142 -9.42641 -8.98624 -8.83775 -6.61423 0.34727 1.26743 1.42699 1.45186 1.63078 1.89266 1.98045 2.14754 2.53567 2.72238 3.06964 3.78377 4.71789 4.88582 5.18450 5.48147 5.68604 5.98920 6.03485 6.43482 6.45245 6.95127 7.87814 Molecular weight = 179.01amu Principal moments of inertia in cm(-1) A = 0.095568 B = 0.012928 C = 0.011446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.914760 B = 2165.254283 C = 2445.771737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C 0.325 3.675 3 C -0.412 4.412 4 C 0.002 3.998 5 C -0.347 4.347 6 C 0.014 3.986 7 C -0.361 4.361 8 H 0.122 0.878 9 C 0.011 3.989 10 N -0.777 5.777 11 Si 1.016 2.984 12 H -0.259 1.259 13 H -0.263 1.263 14 H -0.246 1.246 15 S 0.147 5.853 16 H 0.124 0.876 17 H 0.129 0.871 18 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.896 -0.793 1.442 9.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.226 5.226 2 C 0.018 3.982 3 C -0.532 4.532 4 C -0.030 4.030 5 C -0.370 4.370 6 C -0.108 4.108 7 C -0.397 4.397 8 H 0.139 0.861 9 C -0.212 4.212 10 N -0.402 5.402 11 Si 0.834 3.166 12 H -0.183 1.183 13 H -0.188 1.188 14 H -0.169 1.169 15 S 0.406 5.594 16 H 0.142 0.858 17 H 0.147 0.853 18 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.634 -1.868 2.730 7.413 hybrid contribution 0.877 0.896 -0.942 1.569 sum 7.511 -0.971 1.788 7.782 Atomic orbital electron populations 1.81039 1.12430 1.15446 1.13697 1.25002 0.91644 0.90616 0.90910 1.20378 0.87688 1.26674 1.18452 1.19913 0.92798 0.94986 0.95297 1.19928 0.95100 1.13417 1.08557 1.22506 0.97039 0.95607 0.95667 1.20001 0.92726 1.21086 1.05926 0.86064 1.27484 1.05646 0.92674 0.95386 1.68751 1.35664 1.20385 1.15434 0.84603 0.73583 0.78950 0.79452 1.18324 1.18758 1.16852 1.84536 0.94509 1.46120 1.34279 0.85790 0.85311 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -26.90 18.54 19.00 0.35 -26.55 13 2 C 0.33 15.91 15.81 88.33 1.40 17.30 13 3 C -0.41 -19.92 6.33 23.39 0.15 -19.77 13 4 C 0.00 0.09 10.09 21.55 0.22 0.31 13 5 C -0.35 -15.59 10.15 21.82 0.22 -15.37 13 6 C 0.01 0.67 6.17 22.71 0.14 0.81 13 7 C -0.36 -15.64 9.28 23.10 0.21 -15.42 13 8 H 0.12 4.71 7.86 -2.91 -0.02 4.69 13 9 C 0.01 0.43 5.49 85.40 0.47 0.90 13 10 N -0.78 -32.97 10.66 21.91 0.23 -32.74 13 11 Si 1.02 29.06 29.57 68.60 2.03 31.09 13 12 H -0.26 -7.28 7.11 99.48 0.71 -6.58 13 13 H -0.26 -7.25 7.11 99.48 0.71 -6.55 13 14 H -0.25 -6.67 7.11 99.48 0.71 -5.96 13 15 S 0.15 7.14 20.22 -56.49 -1.14 6.00 13 16 H 0.12 4.88 8.06 -2.91 -0.02 4.85 13 17 H 0.13 5.19 8.06 -2.91 -0.02 5.17 13 18 H 0.32 11.77 8.29 -92.71 -0.77 11.00 13 Total: -1.00 -52.38 195.90 5.56 -46.82 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.28 Total: 6.63 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 2.81 Total: -31.24 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.59 Total: -59.29 kcal Atomic # 14 Polarization: 29.06 SS G_CDS: 2.03 Total: 31.09 kcal Atomic # 16 Polarization: 7.14 SS G_CDS: -1.14 Total: 6.00 kcal Total: -52.38 5.56 -46.82 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238550386.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.461 kcal (2) G-P(sol) polarization free energy of solvation -52.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds