Wall clock time and date at job start Mon Mar 30 2020 01:51:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13602 * 1
3 3 C 1.43201 * 179.97438 * 2 1
4 4 C 1.37690 * 125.08242 * 129.80411 * 3 2 1
5 5 C 1.35676 * 114.88314 * 180.26437 * 4 3 2
6 6 C 1.38822 * 114.53587 * 359.97438 * 5 4 3
7 7 C 1.39490 * 125.23320 * 180.02562 * 6 5 4
8 8 H 1.07995 * 119.99787 * 353.35328 * 7 6 5
9 9 C 1.40411 * 120.00272 * 173.35027 * 7 6 5
10 10 N 1.30630 * 119.99923 * 6.56679 * 9 7 6
11 11 Si 1.86796 * 120.00296 * 186.56801 * 9 7 6
12 12 H 1.48497 * 109.47381 * 94.98599 * 11 9 7
13 13 H 1.48504 * 109.47236 * 214.98857 * 11 9 7
14 14 H 1.48504 * 109.47068 * 334.98741 * 11 9 7
15 15 S 1.75809 * 125.08602 * 310.10115 * 3 2 1
16 16 H 1.08000 * 122.55821 * 0.23908 * 4 3 2
17 17 H 1.07998 * 122.73576 * 179.97438 * 5 4 3
18 18 H 0.96994 * 119.99876 * 180.02562 * 10 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.3591 0.7223 -0.8656
5 6 4.6945 0.5647 -0.6847
6 6 5.0386 -0.2994 0.3458
7 6 6.3419 -0.6216 0.7244
8 1 7.1771 -0.2730 0.1353
9 6 6.5678 -1.3993 1.8715
10 7 5.5591 -1.9281 2.5112
11 14 8.3109 -1.6776 2.4829
12 1 8.6340 -0.6758 3.5303
13 1 8.4231 -3.0441 3.0533
14 1 9.2613 -1.5342 1.3508
15 16 3.5790 -0.9256 1.1004
16 1 2.9480 1.3644 -1.6305
17 1 5.4299 1.0704 -1.2928
18 1 5.7152 -2.4650 3.3038
RHF calculation, no. of doubly occupied orbitals= 28
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238550386.mol2 18
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:51:06
Heat of formation + Delta-G solvation = 11.645000 kcal
Electronic energy + Delta-G solvation = -7821.857496 eV
Core-core repulsion = 6136.260324 eV
Total energy + Delta-G solvation = -1685.597173 eV
No. of doubly occupied orbitals = 28
Molecular weight
(most abundant/longest-lived isotopes) = 179.010 amu
Computer time = 0.09 seconds
Orbital eigenvalues (eV)
-38.05342 -37.01051 -35.75331 -31.21301 -27.69881 -24.38354 -20.87172 -20.31904
-18.27369 -16.64547 -16.11948 -15.21526 -14.59131 -14.23027 -14.10999 -13.70070
-13.44095 -13.02251 -12.76272 -12.55995 -11.94405 -11.80603 -11.32442 -10.93142
-9.42641 -8.98624 -8.83775 -6.61423 0.34727 1.26743 1.42699 1.45186
1.63078 1.89266 1.98045 2.14754 2.53567 2.72238 3.06964 3.78377
4.71789 4.88582 5.18450 5.48147 5.68604 5.98920 6.03485 6.43482
6.45245 6.95127 7.87814
Molecular weight = 179.01amu
Principal moments of inertia in cm(-1)
A = 0.095568 B = 0.012928 C = 0.011446
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 292.914760 B = 2165.254283 C = 2445.771737
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C 0.325 3.675
3 C -0.412 4.412
4 C 0.002 3.998
5 C -0.347 4.347
6 C 0.014 3.986
7 C -0.361 4.361
8 H 0.122 0.878
9 C 0.011 3.989
10 N -0.777 5.777
11 Si 1.016 2.984
12 H -0.259 1.259
13 H -0.263 1.263
14 H -0.246 1.246
15 S 0.147 5.853
16 H 0.124 0.876
17 H 0.129 0.871
18 H 0.317 0.683
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.896 -0.793 1.442 9.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.226 5.226
2 C 0.018 3.982
3 C -0.532 4.532
4 C -0.030 4.030
5 C -0.370 4.370
6 C -0.108 4.108
7 C -0.397 4.397
8 H 0.139 0.861
9 C -0.212 4.212
10 N -0.402 5.402
11 Si 0.834 3.166
12 H -0.183 1.183
13 H -0.188 1.188
14 H -0.169 1.169
15 S 0.406 5.594
16 H 0.142 0.858
17 H 0.147 0.853
18 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges 6.634 -1.868 2.730 7.413
hybrid contribution 0.877 0.896 -0.942 1.569
sum 7.511 -0.971 1.788 7.782
Atomic orbital electron populations
1.81039 1.12430 1.15446 1.13697 1.25002 0.91644 0.90616 0.90910
1.20378 0.87688 1.26674 1.18452 1.19913 0.92798 0.94986 0.95297
1.19928 0.95100 1.13417 1.08557 1.22506 0.97039 0.95607 0.95667
1.20001 0.92726 1.21086 1.05926 0.86064 1.27484 1.05646 0.92674
0.95386 1.68751 1.35664 1.20385 1.15434 0.84603 0.73583 0.78950
0.79452 1.18324 1.18758 1.16852 1.84536 0.94509 1.46120 1.34279
0.85790 0.85311 0.86915
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.54 -26.90 18.54 19.00 0.35 -26.55 13
2 C 0.33 15.91 15.81 88.33 1.40 17.30 13
3 C -0.41 -19.92 6.33 23.39 0.15 -19.77 13
4 C 0.00 0.09 10.09 21.55 0.22 0.31 13
5 C -0.35 -15.59 10.15 21.82 0.22 -15.37 13
6 C 0.01 0.67 6.17 22.71 0.14 0.81 13
7 C -0.36 -15.64 9.28 23.10 0.21 -15.42 13
8 H 0.12 4.71 7.86 -2.91 -0.02 4.69 13
9 C 0.01 0.43 5.49 85.40 0.47 0.90 13
10 N -0.78 -32.97 10.66 21.91 0.23 -32.74 13
11 Si 1.02 29.06 29.57 68.60 2.03 31.09 13
12 H -0.26 -7.28 7.11 99.48 0.71 -6.58 13
13 H -0.26 -7.25 7.11 99.48 0.71 -6.55 13
14 H -0.25 -6.67 7.11 99.48 0.71 -5.96 13
15 S 0.15 7.14 20.22 -56.49 -1.14 6.00 13
16 H 0.12 4.88 8.06 -2.91 -0.02 4.85 13
17 H 0.13 5.19 8.06 -2.91 -0.02 5.17 13
18 H 0.32 11.77 8.29 -92.71 -0.77 11.00 13
Total: -1.00 -52.38 195.90 5.56 -46.82
By element:
Atomic # 1 Polarization: 5.35 SS G_CDS: 1.28 Total: 6.63 kcal
Atomic # 6 Polarization: -34.05 SS G_CDS: 2.81 Total: -31.24 kcal
Atomic # 7 Polarization: -59.88 SS G_CDS: 0.59 Total: -59.29 kcal
Atomic # 14 Polarization: 29.06 SS G_CDS: 2.03 Total: 31.09 kcal
Atomic # 16 Polarization: 7.14 SS G_CDS: -1.14 Total: 6.00 kcal
Total: -52.38 5.56 -46.82 kcal
The number of atoms in the molecule is 18
The average number of expansion shells was 13.00
The maximum number of expansion shells was 13
The minimum number of expansion shells was 13
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238550386.mol2 18
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.461 kcal
(2) G-P(sol) polarization free energy of solvation -52.377 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.083 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.816 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.645 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.09 seconds