Wall clock time and date at job start Mon Mar 30 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36921 * 119.99949 * 2 1 4 4 H 1.07994 * 119.99913 * 204.41889 * 3 2 1 5 5 C 1.38818 * 119.99550 * 24.42393 * 3 2 1 6 6 N 1.31566 * 120.00321 * 10.49742 * 5 3 2 7 7 Si 1.86796 * 119.99647 * 190.49727 * 5 3 2 8 8 H 1.48498 * 109.47456 * 84.93120 * 7 5 3 9 9 H 1.48501 * 109.47068 * 204.93434 * 7 5 3 10 10 H 1.48508 * 109.47263 * 324.92934 * 7 5 3 11 11 C 1.38845 * 120.00443 * 180.02562 * 2 1 3 12 12 C 1.39218 * 119.71072 * 184.99724 * 11 2 1 13 13 C 1.38310 * 119.08671 * 180.02562 * 12 11 2 14 14 C 1.38884 * 118.50669 * 0.02562 * 13 12 11 15 15 C 1.38123 * 119.34157 * 0.24391 * 14 13 12 16 16 N 1.31893 * 120.86099 * 359.47753 * 15 14 13 17 17 H 1.08998 * 109.47004 * 274.48398 * 1 2 3 18 18 H 1.08996 * 109.47349 * 34.48283 * 1 2 3 19 19 H 1.09006 * 109.47121 * 154.49046 * 1 2 3 20 20 H 0.97003 * 119.99869 * 180.02562 * 6 5 3 21 21 H 1.07995 * 120.45874 * 0.05066 * 12 11 2 22 22 H 1.07999 * 120.74709 * 180.02562 * 13 12 11 23 23 H 1.08008 * 120.32923 * 179.97438 * 14 13 12 24 24 H 1.07997 * 119.57000 * 179.75466 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1570 1.2276 -0.3866 5 6 1.5485 2.3341 0.4971 6 7 0.4113 2.2501 1.1533 7 14 2.3545 3.9986 0.2344 8 1 1.9596 4.5360 -1.0924 9 1 1.9140 4.9355 1.2990 10 1 3.8310 3.8477 0.2878 11 6 2.1593 -1.2024 -0.0005 12 6 3.5475 -1.1976 0.1048 13 6 4.2261 -2.4027 0.1024 14 6 3.4919 -3.5767 -0.0061 15 6 2.1166 -3.5074 -0.1128 16 7 1.4949 -2.3442 -0.1025 17 1 -0.3633 0.0803 1.0245 18 1 -0.3634 0.8471 -0.5818 19 1 -0.3634 -0.9275 -0.4426 20 1 -0.0088 3.0527 1.5003 21 1 4.0870 -0.2657 0.1876 22 1 5.3027 -2.4303 0.1831 23 1 3.9919 -4.5341 -0.0114 24 1 1.5424 -4.4177 -0.2014 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258877355.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:00 Heat of formation + Delta-G solvation = 50.163559 kcal Electronic energy + Delta-G solvation = -10190.549944 eV Core-core repulsion = 8297.421947 eV Total energy + Delta-G solvation = -1893.127997 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.95223 -35.81169 -32.03893 -31.15790 -28.82199 -26.48283 -24.00595 -22.10305 -20.69047 -17.53214 -16.43997 -15.03714 -14.82531 -14.31439 -13.61173 -13.51016 -12.87738 -12.07558 -12.04732 -11.47691 -11.18462 -10.86842 -10.73955 -10.43168 -10.32335 -9.40797 -8.86306 -8.57816 -8.22951 -6.81893 -6.37527 -3.86324 2.43087 2.54320 3.13869 3.15212 3.18120 3.98559 4.76499 4.83389 5.23921 5.62488 5.78985 6.23027 6.41885 6.46478 6.78916 6.86893 7.02147 7.13676 7.30310 7.35987 7.42937 7.68942 8.03720 8.51186 9.06084 9.24654 9.75616 10.57983 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.069063 B = 0.013406 C = 0.011517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.327986 B = 2088.136445 C = 2430.645559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.424 5.424 3 C -0.310 4.310 4 H 0.097 0.903 5 C 0.031 3.969 6 N -0.869 5.869 7 Si 0.931 3.069 8 H -0.275 1.275 9 H -0.282 1.282 10 H -0.269 1.269 11 C 0.368 3.632 12 C -0.252 4.252 13 C -0.038 4.038 14 C -0.308 4.308 15 C 0.153 3.847 16 N -0.574 5.574 17 H 0.056 0.944 18 H 0.055 0.945 19 H 0.043 0.957 20 H 0.270 0.730 21 H 0.122 0.878 22 H 0.109 0.891 23 H 0.106 0.894 24 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -3.170 -1.636 4.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.113 5.113 3 C -0.439 4.439 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.505 5.505 7 Si 0.758 3.242 8 H -0.201 1.201 9 H -0.207 1.207 10 H -0.193 1.193 11 C 0.127 3.873 12 C -0.280 4.280 13 C -0.063 4.063 14 C -0.335 4.335 15 C -0.009 4.009 16 N -0.295 5.295 17 H 0.074 0.926 18 H 0.074 0.926 19 H 0.062 0.938 20 H 0.081 0.919 21 H 0.140 0.860 22 H 0.128 0.872 23 H 0.124 0.876 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.842 -2.609 -1.583 3.565 hybrid contribution 1.247 0.816 0.063 1.492 sum 3.089 -1.792 -1.521 3.882 Atomic orbital electron populations 1.21360 0.79933 0.98768 1.01634 1.42479 1.05028 1.01161 1.62599 1.19619 1.00894 0.84189 1.39200 0.88541 1.25435 0.96653 1.00297 0.95063 1.70097 1.17429 1.29844 1.33117 0.85864 0.79435 0.80826 0.78125 1.20114 1.20716 1.19316 1.18507 0.88645 0.86074 0.94099 1.21167 0.93938 0.98376 1.14474 1.20994 0.98395 0.92403 0.94548 1.21196 0.95450 0.97709 1.19124 1.22008 0.91739 0.94229 0.92955 1.67102 1.40408 0.97535 1.24476 0.92578 0.92640 0.93792 0.91934 0.85994 0.87247 0.87550 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.19 8.79 59.85 0.53 3.72 14 2 N -0.42 -11.29 3.12 -122.43 -0.38 -11.68 14 3 C -0.31 -8.25 8.89 -15.06 -0.13 -8.39 14 4 H 0.10 2.47 6.35 -52.49 -0.33 2.13 14 5 C 0.03 0.80 5.14 -17.45 -0.09 0.71 14 6 N -0.87 -23.31 10.66 55.49 0.59 -22.72 14 7 Si 0.93 19.86 29.57 -169.99 -5.03 14.83 14 8 H -0.28 -5.81 7.11 56.52 0.40 -5.41 14 9 H -0.28 -5.98 7.11 56.52 0.40 -5.58 14 10 H -0.27 -5.60 7.11 56.52 0.40 -5.20 14 11 C 0.37 9.29 7.34 -155.06 -1.14 8.15 14 12 C -0.25 -5.81 9.27 -39.19 -0.36 -6.17 14 13 C -0.04 -0.75 10.17 -39.32 -0.40 -1.15 14 14 C -0.31 -5.82 10.11 -39.38 -0.40 -6.22 14 15 C 0.15 3.08 11.18 -17.57 -0.20 2.89 14 16 N -0.57 -13.68 9.01 -12.43 -0.11 -13.79 14 17 H 0.06 1.48 7.35 -51.93 -0.38 1.10 14 18 H 0.05 1.41 7.33 -51.93 -0.38 1.03 14 19 H 0.04 1.04 7.16 -51.93 -0.37 0.67 14 20 H 0.27 6.82 8.31 -40.82 -0.34 6.48 14 21 H 0.12 2.77 6.30 -52.49 -0.33 2.44 14 22 H 0.11 1.79 8.06 -52.49 -0.42 1.37 14 23 H 0.11 1.67 8.06 -52.48 -0.42 1.25 14 24 H 0.13 2.17 8.06 -52.49 -0.42 1.75 14 LS Contribution 211.52 15.07 3.19 3.19 Total: -1.00 -28.45 211.52 -6.13 -34.58 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -2.20 Total: 2.04 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.19 Total: -6.45 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.10 Total: -48.19 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -28.45 -6.13 -34.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258877355.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.745 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds