Wall clock time and date at job start Mon Mar 30 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36921 * 119.99949 * 2 1 4 4 H 1.07994 * 119.99913 * 204.41889 * 3 2 1 5 5 C 1.38818 * 119.99550 * 24.42393 * 3 2 1 6 6 N 1.31566 * 120.00321 * 10.49742 * 5 3 2 7 7 Si 1.86796 * 119.99647 * 190.49727 * 5 3 2 8 8 H 1.48498 * 109.47456 * 84.93120 * 7 5 3 9 9 H 1.48501 * 109.47068 * 204.93434 * 7 5 3 10 10 H 1.48508 * 109.47263 * 324.92934 * 7 5 3 11 11 C 1.38845 * 120.00443 * 180.02562 * 2 1 3 12 12 C 1.39218 * 119.71072 * 184.99724 * 11 2 1 13 13 C 1.38310 * 119.08671 * 180.02562 * 12 11 2 14 14 C 1.38884 * 118.50669 * 0.02562 * 13 12 11 15 15 C 1.38123 * 119.34157 * 0.24391 * 14 13 12 16 16 N 1.31893 * 120.86099 * 359.47753 * 15 14 13 17 17 H 1.08998 * 109.47004 * 274.48398 * 1 2 3 18 18 H 1.08996 * 109.47349 * 34.48283 * 1 2 3 19 19 H 1.09006 * 109.47121 * 154.49046 * 1 2 3 20 20 H 0.97003 * 119.99869 * 180.02562 * 6 5 3 21 21 H 1.07995 * 120.45874 * 0.05066 * 12 11 2 22 22 H 1.07999 * 120.74709 * 180.02562 * 13 12 11 23 23 H 1.08008 * 120.32923 * 179.97438 * 14 13 12 24 24 H 1.07997 * 119.57000 * 179.75466 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1570 1.2276 -0.3866 5 6 1.5485 2.3341 0.4971 6 7 0.4113 2.2501 1.1533 7 14 2.3545 3.9986 0.2344 8 1 1.9596 4.5360 -1.0924 9 1 1.9140 4.9355 1.2990 10 1 3.8310 3.8477 0.2878 11 6 2.1593 -1.2024 -0.0005 12 6 3.5475 -1.1976 0.1048 13 6 4.2261 -2.4027 0.1024 14 6 3.4919 -3.5767 -0.0061 15 6 2.1166 -3.5074 -0.1128 16 7 1.4949 -2.3442 -0.1025 17 1 -0.3633 0.0803 1.0245 18 1 -0.3634 0.8471 -0.5818 19 1 -0.3634 -0.9275 -0.4426 20 1 -0.0088 3.0527 1.5003 21 1 4.0870 -0.2657 0.1876 22 1 5.3027 -2.4303 0.1831 23 1 3.9919 -4.5341 -0.0114 24 1 1.5424 -4.4177 -0.2014 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258877355.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:00 Heat of formation + Delta-G solvation = 33.521090 kcal Electronic energy + Delta-G solvation = -10191.271615 eV Core-core repulsion = 8297.421947 eV Total energy + Delta-G solvation = -1893.849669 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.70329 -37.64024 -33.90283 -32.87887 -30.58770 -28.41241 -25.86783 -23.79692 -22.47123 -19.36715 -18.28026 -16.77919 -16.59491 -15.97862 -15.47887 -15.23512 -14.66146 -13.90344 -13.65420 -13.29569 -12.95740 -12.63307 -12.55581 -12.21496 -12.04070 -11.27320 -10.60513 -10.37342 -9.96106 -8.66084 -8.26321 -5.84383 0.75196 0.87348 1.41420 1.47616 1.54132 2.23354 2.91562 3.03024 3.44651 4.00713 4.32267 4.61756 4.71655 4.76634 4.94237 4.99467 5.23869 5.31259 5.36361 5.48125 5.74459 5.92438 6.27980 6.63456 7.25256 7.36988 7.91978 8.69908 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.069063 B = 0.013406 C = 0.011517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.327986 B = 2088.136445 C = 2430.645559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.148 3.852 2 N -0.458 5.458 3 C -0.332 4.332 4 H 0.097 0.903 5 C -0.016 4.016 6 N -0.906 5.906 7 Si 1.001 2.999 8 H -0.271 1.271 9 H -0.280 1.280 10 H -0.260 1.260 11 C 0.346 3.654 12 C -0.277 4.277 13 C -0.032 4.032 14 C -0.284 4.284 15 C 0.139 3.861 16 N -0.598 5.598 17 H 0.032 0.968 18 H 0.042 0.958 19 H 0.051 0.949 20 H 0.271 0.729 21 H 0.115 0.885 22 H 0.150 0.850 23 H 0.152 0.848 24 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.868 -4.668 -1.969 7.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.151 5.151 3 C -0.460 4.460 4 H 0.115 0.885 5 C -0.217 4.217 6 N -0.543 5.543 7 Si 0.823 3.177 8 H -0.196 1.196 9 H -0.205 1.205 10 H -0.184 1.184 11 C 0.108 3.892 12 C -0.304 4.304 13 C -0.057 4.057 14 C -0.310 4.310 15 C -0.022 4.022 16 N -0.320 5.320 17 H 0.051 0.949 18 H 0.060 0.940 19 H 0.069 0.931 20 H 0.080 0.920 21 H 0.133 0.867 22 H 0.167 0.833 23 H 0.170 0.830 24 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.652 -4.177 -1.926 5.874 hybrid contribution 0.807 0.937 0.152 1.246 sum 4.459 -3.240 -1.775 5.791 Atomic orbital electron populations 1.21026 0.80317 0.98343 0.99866 1.42575 1.05014 1.01780 1.65769 1.19861 1.01242 0.85001 1.39921 0.88546 1.26331 0.97212 1.03596 0.94575 1.70218 1.18920 1.30620 1.34591 0.84826 0.78753 0.76126 0.77960 1.19607 1.20545 1.18398 1.18930 0.89706 0.86291 0.94257 1.21318 0.93319 0.99780 1.16017 1.21499 1.00534 0.91308 0.92368 1.21774 0.94996 0.99331 1.14851 1.22797 0.93213 0.94258 0.91888 1.67127 1.41571 0.98287 1.24979 0.94916 0.93968 0.93092 0.91975 0.86713 0.83258 0.83014 0.81126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.82 8.79 127.77 1.12 8.94 14 2 N -0.46 -25.15 3.12 -541.25 -1.69 -26.84 14 3 C -0.33 -18.16 8.89 84.04 0.75 -17.42 14 4 H 0.10 5.06 6.35 -2.91 -0.02 5.04 14 5 C -0.02 -0.84 5.14 84.87 0.44 -0.40 14 6 N -0.91 -50.35 10.66 21.65 0.23 -50.12 14 7 Si 1.00 41.34 29.57 68.60 2.03 43.37 14 8 H -0.27 -10.86 7.11 99.48 0.71 -10.16 14 9 H -0.28 -11.36 7.11 99.48 0.71 -10.65 14 10 H -0.26 -10.23 7.11 99.48 0.71 -9.52 14 11 C 0.35 17.55 7.34 133.11 0.98 18.52 14 12 C -0.28 -12.48 9.27 22.52 0.21 -12.28 14 13 C -0.03 -1.13 10.17 22.44 0.23 -0.91 14 14 C -0.28 -9.31 10.11 22.40 0.23 -9.08 14 15 C 0.14 5.11 11.18 84.66 0.95 6.06 14 16 N -0.60 -27.88 9.01 -193.24 -1.74 -29.62 14 17 H 0.03 1.81 7.35 -2.39 -0.02 1.80 14 18 H 0.04 2.25 7.33 -2.39 -0.02 2.23 14 19 H 0.05 2.50 7.16 -2.38 -0.02 2.48 14 20 H 0.27 14.12 8.31 -92.71 -0.77 13.35 14 21 H 0.11 5.23 6.30 -2.91 -0.02 5.21 14 22 H 0.15 4.11 8.06 -2.91 -0.02 4.09 14 23 H 0.15 3.68 8.06 -2.91 -0.02 3.66 14 24 H 0.17 4.83 8.06 -2.91 -0.02 4.81 14 Total: -1.00 -62.34 211.52 4.92 -57.43 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.19 Total: 12.34 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.89 Total: -6.56 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -3.20 Total: -106.58 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -62.34 4.92 -57.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258877355.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.950 kcal (2) G-P(sol) polarization free energy of solvation -62.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds