Wall clock time and date at job start Mon Mar 30 2020 01:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32349 * 120.44979 * 2 1 4 4 C 1.31773 * 120.81978 * 180.27204 * 3 2 1 5 5 N 1.31813 * 121.75654 * 0.02562 * 4 3 2 6 6 C 1.32318 * 120.81731 * 0.02562 * 5 4 3 7 7 C 1.38585 * 120.44650 * 180.27569 * 2 1 3 8 8 C 1.50700 * 120.80019 * 359.70600 * 7 2 1 9 9 C 1.50695 * 109.47314 * 84.99409 * 8 7 2 10 10 H 1.08000 * 120.00026 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00149 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00224 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00076 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46887 * 90.00312 * 13 11 9 15 15 H 1.48497 * 109.47153 * 210.00597 * 13 11 9 16 16 H 1.48497 * 109.46932 * 330.00650 * 13 11 9 17 17 H 1.08998 * 109.47054 * 269.72066 * 1 2 3 18 18 H 1.08996 * 109.47023 * 29.72222 * 1 2 3 19 19 H 1.09001 * 109.47143 * 149.72600 * 1 2 3 20 20 H 1.08005 * 119.12328 * 180.02562 * 4 3 2 21 21 H 1.08003 * 120.44543 * 180.02562 * 6 5 4 22 22 H 1.08999 * 109.46933 * 205.00276 * 8 7 2 23 23 H 1.09004 * 109.47196 * 324.99847 * 8 7 2 24 24 H 0.96993 * 120.00311 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1777 1.1409 0.0000 4 6 3.4954 1.1495 -0.0054 5 7 4.1964 0.0332 -0.0114 6 6 3.5945 -1.1452 -0.0128 7 6 2.2092 -1.1947 -0.0057 8 6 1.4843 -2.5159 -0.0055 9 6 1.1277 -2.8936 -1.4201 10 1 1.3993 -2.2423 -2.2377 11 6 0.4558 -4.0711 -1.6707 12 7 0.1255 -4.8645 -0.6752 13 14 0.0144 -4.5396 -3.4244 14 1 1.1199 -5.3341 -4.0177 15 1 -1.2308 -5.3487 -3.4221 16 1 -0.1967 -3.3084 -4.2274 17 1 -0.3633 -0.0050 1.0276 18 1 -0.3633 0.8924 -0.5095 19 1 -0.3633 -0.8875 -0.5181 20 1 4.0149 2.0963 -0.0048 21 1 4.1747 -2.0561 -0.0174 22 1 2.1280 -3.2834 0.4244 23 1 0.5741 -2.4308 0.5882 24 1 -0.3475 -5.6927 -0.8515 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259764717.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:17 Heat of formation + Delta-G solvation = 27.356780 kcal Electronic energy + Delta-G solvation = -10050.055041 eV Core-core repulsion = 8155.938068 eV Total energy + Delta-G solvation = -1894.116973 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.35355 -34.38677 -33.45573 -31.99373 -28.47471 -27.21644 -24.05453 -22.32726 -21.15026 -17.01636 -16.47567 -16.16302 -14.77299 -14.33316 -13.28327 -13.09305 -12.52890 -12.39520 -12.32418 -11.81695 -11.26789 -11.16412 -10.74034 -10.50205 -9.91591 -9.71098 -9.52383 -8.68534 -8.45355 -8.29772 -6.17308 -4.22696 1.68199 1.71256 3.23510 3.30593 3.34264 4.30143 4.46662 4.67224 4.82972 5.17258 5.28390 5.70268 5.81354 6.10191 6.18813 6.34422 6.46940 6.75663 7.11041 7.37659 7.47512 7.66457 7.78040 8.13601 8.71200 8.81825 9.42539 10.92216 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.059257 B = 0.012246 C = 0.011760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.401972 B = 2285.844198 C = 2380.281829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.161 3.839 3 N -0.527 5.527 4 C 0.254 3.746 5 N -0.530 5.530 6 C 0.129 3.871 7 C -0.132 4.132 8 C 0.057 3.943 9 C -0.517 4.517 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 H 0.073 0.927 18 H 0.068 0.932 19 H 0.102 0.898 20 H 0.183 0.817 21 H 0.162 0.838 22 H 0.033 0.967 23 H 0.038 0.962 24 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 6.082 0.985 6.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.015 3.985 3 N -0.242 5.242 4 C -0.034 4.034 5 N -0.244 5.244 6 C -0.036 4.036 7 C -0.136 4.136 8 C 0.019 3.981 9 C -0.555 4.555 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 H 0.092 0.908 18 H 0.087 0.913 19 H 0.120 0.880 20 H 0.200 0.800 21 H 0.179 0.821 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.119 6.786 1.028 7.183 hybrid contribution -0.546 -1.111 -0.966 1.570 sum 1.573 5.675 0.062 5.889 Atomic orbital electron populations 1.20794 0.88226 1.04460 1.02792 1.21599 0.97564 0.87719 0.91573 1.68119 1.10309 1.31065 1.14739 1.24535 0.87087 0.96606 0.95169 1.68259 1.42299 0.99387 1.14494 1.23107 0.92305 0.95530 0.92615 1.22302 0.95718 0.99732 0.95851 1.18275 0.95359 0.86334 0.98172 1.20952 1.37529 1.05529 0.91529 0.92619 1.24979 0.95482 0.96133 0.97323 1.69939 1.39660 1.12238 1.30928 0.86527 0.78026 0.78653 0.84490 1.20495 1.21016 1.19767 0.90838 0.91335 0.87955 0.80020 0.82090 0.94882 0.94366 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.48 36.00 0.34 -1.54 14 2 C 0.16 3.25 6.82 -82.24 -0.56 2.69 14 3 N -0.53 -10.18 10.38 -10.80 -0.11 -10.29 14 4 C 0.25 4.53 12.28 -92.16 -1.13 3.40 14 5 N -0.53 -10.12 10.44 -14.58 -0.15 -10.27 14 6 C 0.13 2.57 10.99 -17.20 -0.19 2.38 14 7 C -0.13 -2.82 5.10 -104.35 -0.53 -3.35 14 8 C 0.06 1.36 4.46 -29.04 -0.13 1.23 14 9 C -0.52 -13.63 8.41 -34.44 -0.29 -13.92 14 10 H 0.06 1.49 7.74 -52.49 -0.41 1.08 14 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 14 12 N -0.89 -24.87 13.29 55.43 0.74 -24.14 14 13 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 14 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 14 17 H 0.07 1.18 8.14 -51.93 -0.42 0.75 14 18 H 0.07 1.10 8.14 -51.93 -0.42 0.68 14 19 H 0.10 2.01 6.35 -51.93 -0.33 1.68 14 20 H 0.18 2.50 8.06 -52.48 -0.42 2.08 14 21 H 0.16 2.91 8.06 -52.48 -0.42 2.49 14 22 H 0.03 0.83 8.07 -51.93 -0.42 0.41 14 23 H 0.04 0.95 7.12 -51.93 -0.37 0.58 14 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 14 LS Contribution 217.96 15.07 3.28 3.28 Total: -1.00 -28.61 217.96 -6.21 -34.81 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -2.35 Total: -1.55 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -2.59 Total: -7.52 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.47 Total: -44.69 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.61 -6.21 -34.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764717.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.171 kcal (2) G-P(sol) polarization free energy of solvation -28.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds