Wall clock time and date at job start Mon Mar 30 2020 01:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38386 * 120.00072 * 2 1 4 4 N 1.32126 * 119.99789 * 179.97438 * 3 2 1 5 5 C 1.32156 * 119.99802 * 0.02562 * 4 3 2 6 6 C 1.38349 * 120.00216 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99822 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47168 * 84.99458 * 7 6 5 9 9 H 1.07999 * 120.00202 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99746 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99573 * 0.27650 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46758 * 89.99934 * 12 10 8 14 14 H 1.48499 * 109.47026 * 209.99782 * 12 10 8 15 15 H 1.48496 * 109.47474 * 329.99818 * 12 10 8 16 16 N 1.32122 * 119.99936 * 180.25103 * 2 1 3 17 17 H 1.08994 * 109.47009 * 89.99685 * 1 2 3 18 18 H 1.08997 * 109.47021 * 210.00161 * 1 2 3 19 19 H 1.09007 * 109.47018 * 329.99845 * 1 2 3 20 20 H 1.07998 * 120.00214 * 0.02562 * 3 2 1 21 21 H 1.08003 * 119.99747 * 180.02562 * 5 4 3 22 22 H 1.09000 * 109.46490 * 324.99576 * 7 6 5 23 23 H 1.08999 * 109.46382 * 204.99792 * 7 6 5 24 24 H 0.97001 * 120.00651 * 359.71956 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5203 1.1984 0.0005 5 6 4.1810 0.0538 0.0005 6 6 3.4892 -1.1443 0.0005 7 6 4.2427 -2.4494 -0.0001 8 6 4.6017 -2.8228 1.4151 9 1 4.3135 -2.1792 2.2331 10 6 5.2991 -3.9856 1.6654 11 7 5.6556 -4.7660 0.6687 12 14 5.7448 -4.4481 3.4195 13 1 4.6553 -5.2684 4.0071 14 1 7.0078 -5.2292 3.4198 15 1 5.9257 -3.2144 4.2260 16 7 2.1677 -1.1442 -0.0050 17 1 -0.3633 0.0001 -1.0276 18 1 -0.3633 -0.8899 0.5138 19 1 -0.3633 0.8900 0.5139 20 1 1.6591 2.1338 0.0004 21 1 5.2610 0.0538 0.0013 22 1 5.1531 -2.3430 -0.5899 23 1 3.6174 -3.2296 -0.4343 24 1 5.4244 -4.5257 -0.2422 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259766861.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:20 Heat of formation + Delta-G solvation = 24.975261 kcal Electronic energy + Delta-G solvation = -9897.294287 eV Core-core repulsion = 8003.074043 eV Total energy + Delta-G solvation = -1894.220243 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.50944 -34.34297 -33.88486 -32.22546 -28.61595 -26.93966 -23.91362 -22.70838 -21.29303 -17.08072 -16.92140 -16.32070 -14.75012 -14.35334 -13.75008 -13.21938 -12.77942 -12.46212 -12.36377 -11.85174 -11.56116 -10.98673 -10.67717 -10.61411 -10.43857 -10.13238 -9.06378 -8.50085 -8.38562 -8.24380 -6.46943 -4.18478 1.36282 1.73861 3.41119 3.44022 3.60169 4.22999 4.49945 4.55053 4.78121 5.01154 5.25156 5.31459 5.59551 5.67796 5.82245 5.94059 6.08414 6.24078 6.91109 7.10579 7.16516 7.87939 7.96290 8.31982 8.45479 8.73709 9.51463 10.93112 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.061700 B = 0.010835 C = 0.010558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.696387 B = 2583.678054 C = 2651.359792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.074 3.926 3 C 0.009 3.991 4 N -0.441 5.441 5 C 0.035 3.965 6 C 0.142 3.858 7 C 0.049 3.951 8 C -0.593 4.593 9 H 0.049 0.951 10 C 0.021 3.979 11 N -0.907 5.907 12 Si 1.075 2.925 13 H -0.286 1.286 14 H -0.282 1.282 15 H -0.288 1.288 16 N -0.447 5.447 17 H 0.075 0.925 18 H 0.077 0.923 19 H 0.073 0.927 20 H 0.157 0.843 21 H 0.166 0.834 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 8.430 -0.879 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.067 4.067 3 C -0.150 4.150 4 N -0.154 5.154 5 C -0.125 4.125 6 C 0.002 3.998 7 C 0.011 3.989 8 C -0.632 4.632 9 H 0.068 0.932 10 C -0.183 4.183 11 N -0.542 5.542 12 Si 0.903 3.097 13 H -0.213 1.213 14 H -0.208 1.208 15 H -0.214 1.214 16 N -0.163 5.163 17 H 0.094 0.906 18 H 0.096 0.904 19 H 0.092 0.908 20 H 0.174 0.826 21 H 0.183 0.817 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.729 7.307 0.022 9.285 hybrid contribution -0.810 1.244 -0.885 1.728 sum -6.539 8.551 -0.863 10.799 Atomic orbital electron populations 1.20615 0.88603 1.03375 1.02809 1.22307 0.98116 0.90099 0.96184 1.23284 0.91155 0.98569 1.02005 1.68310 1.08708 1.30161 1.08250 1.23549 1.01785 0.88279 0.98935 1.22955 0.89619 0.98567 0.88665 1.18433 0.93720 0.87493 0.99237 1.21771 1.40399 1.10134 0.90874 0.93245 1.25889 0.93710 0.92738 1.06011 1.70759 1.44100 1.38736 1.00618 0.83450 0.76886 0.75787 0.73595 1.21298 1.20754 1.21422 1.68287 1.09216 1.28484 1.10354 0.90589 0.90406 0.90798 0.82581 0.81714 0.94901 0.94770 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.19 36.01 0.37 -0.84 14 2 C 0.07 1.30 6.79 -82.41 -0.56 0.74 14 3 C 0.01 0.16 10.88 -17.37 -0.19 -0.03 14 4 N -0.44 -8.47 10.50 -13.06 -0.14 -8.61 14 5 C 0.03 0.72 10.90 -17.37 -0.19 0.53 14 6 C 0.14 3.26 5.98 -82.41 -0.49 2.77 14 7 C 0.05 1.27 4.57 -29.04 -0.13 1.14 14 8 C -0.59 -16.83 9.09 -34.44 -0.31 -17.14 14 9 H 0.05 1.43 7.74 -52.49 -0.41 1.02 14 10 C 0.02 0.60 5.46 -17.82 -0.10 0.50 14 11 N -0.91 -27.13 13.65 55.43 0.76 -26.37 14 12 Si 1.08 25.19 29.90 -169.99 -5.08 20.11 14 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 14 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 15 H -0.29 -6.47 7.11 56.52 0.40 -6.06 14 16 N -0.45 -9.81 10.35 -5.56 -0.06 -9.87 14 17 H 0.08 0.83 8.14 -51.93 -0.42 0.41 14 18 H 0.08 1.03 8.14 -51.93 -0.42 0.60 14 19 H 0.07 0.71 8.09 -51.92 -0.42 0.30 14 20 H 0.16 1.96 8.06 -52.49 -0.42 1.53 14 21 H 0.17 3.15 8.06 -52.48 -0.42 2.72 14 22 H 0.03 0.84 7.98 -51.93 -0.41 0.42 14 23 H 0.03 0.93 8.01 -51.93 -0.42 0.51 14 24 H 0.27 7.99 7.22 -40.82 -0.29 7.70 14 LS Contribution 221.02 15.07 3.33 3.33 Total: -1.00 -31.56 221.02 -5.23 -36.80 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -2.44 Total: -3.05 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.61 Total: -12.33 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.56 Total: -44.85 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -31.56 -5.23 -36.80 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766861.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.773 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds