Wall clock time and date at job start Mon Mar 30 2020 01:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38386 * 120.00072 * 2 1 4 4 N 1.32126 * 119.99789 * 179.97438 * 3 2 1 5 5 C 1.32156 * 119.99802 * 0.02562 * 4 3 2 6 6 C 1.38349 * 120.00216 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99822 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47168 * 84.99458 * 7 6 5 9 9 H 1.07999 * 120.00202 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99746 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99573 * 0.27650 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46758 * 89.99934 * 12 10 8 14 14 H 1.48499 * 109.47026 * 209.99782 * 12 10 8 15 15 H 1.48496 * 109.47474 * 329.99818 * 12 10 8 16 16 N 1.32122 * 119.99936 * 180.25103 * 2 1 3 17 17 H 1.08994 * 109.47009 * 89.99685 * 1 2 3 18 18 H 1.08997 * 109.47021 * 210.00161 * 1 2 3 19 19 H 1.09007 * 109.47018 * 329.99845 * 1 2 3 20 20 H 1.07998 * 120.00214 * 0.02562 * 3 2 1 21 21 H 1.08003 * 119.99747 * 180.02562 * 5 4 3 22 22 H 1.09000 * 109.46490 * 324.99576 * 7 6 5 23 23 H 1.08999 * 109.46382 * 204.99792 * 7 6 5 24 24 H 0.97001 * 120.00651 * 359.71956 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5203 1.1984 0.0005 5 6 4.1810 0.0538 0.0005 6 6 3.4892 -1.1443 0.0005 7 6 4.2427 -2.4494 -0.0001 8 6 4.6017 -2.8228 1.4151 9 1 4.3135 -2.1792 2.2331 10 6 5.2991 -3.9856 1.6654 11 7 5.6556 -4.7660 0.6687 12 14 5.7448 -4.4481 3.4195 13 1 4.6553 -5.2684 4.0071 14 1 7.0078 -5.2292 3.4198 15 1 5.9257 -3.2144 4.2260 16 7 2.1677 -1.1442 -0.0050 17 1 -0.3633 0.0001 -1.0276 18 1 -0.3633 -0.8899 0.5138 19 1 -0.3633 0.8900 0.5139 20 1 1.6591 2.1338 0.0004 21 1 5.2610 0.0538 0.0013 22 1 5.1531 -2.3430 -0.5899 23 1 3.6174 -3.2296 -0.4343 24 1 5.4244 -4.5257 -0.2422 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259766861.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:20 Heat of formation + Delta-G solvation = 3.059397 kcal Electronic energy + Delta-G solvation = -9898.244630 eV Core-core repulsion = 8003.074043 eV Total energy + Delta-G solvation = -1895.170587 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.03048 -36.27540 -35.38239 -33.98801 -30.28832 -28.45598 -25.88901 -24.26457 -22.97374 -19.08359 -18.59462 -17.76406 -16.40966 -15.92086 -15.58034 -14.88251 -14.31996 -13.84504 -13.74143 -13.55750 -13.16766 -12.64286 -12.50434 -12.47551 -12.03775 -11.93758 -11.02125 -10.63519 -9.97937 -9.88193 -8.74956 -6.48154 -0.12867 0.19628 1.51328 1.59823 1.78673 2.50598 2.75480 3.06166 3.16379 3.37156 3.58588 3.94850 4.18605 4.42173 4.54238 4.74856 4.81298 4.90721 5.08985 5.17846 5.52357 5.78728 6.03706 6.36951 6.46053 6.91881 7.30442 8.64820 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.061700 B = 0.010835 C = 0.010558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.696387 B = 2583.678054 C = 2651.359792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.071 3.929 3 C 0.028 3.972 4 N -0.447 5.447 5 C 0.024 3.976 6 C 0.109 3.891 7 C 0.056 3.944 8 C -0.605 4.605 9 H 0.040 0.960 10 C -0.028 4.028 11 N -0.928 5.928 12 Si 1.122 2.878 13 H -0.273 1.273 14 H -0.275 1.275 15 H -0.272 1.272 16 N -0.480 5.480 17 H 0.097 0.903 18 H 0.068 0.932 19 H 0.114 0.886 20 H 0.211 0.789 21 H 0.169 0.831 22 H 0.026 0.974 23 H 0.007 0.993 24 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 10.241 -0.012 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.071 4.071 3 C -0.133 4.133 4 N -0.160 5.160 5 C -0.134 4.134 6 C -0.029 4.029 7 C 0.018 3.982 8 C -0.643 4.643 9 H 0.058 0.942 10 C -0.226 4.226 11 N -0.564 5.564 12 Si 0.942 3.058 13 H -0.199 1.199 14 H -0.200 1.200 15 H -0.197 1.197 16 N -0.197 5.197 17 H 0.116 0.884 18 H 0.087 0.913 19 H 0.132 0.868 20 H 0.227 0.773 21 H 0.186 0.814 22 H 0.044 0.956 23 H 0.025 0.975 24 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.132 9.113 0.870 11.605 hybrid contribution -0.536 0.816 -1.218 1.561 sum -7.667 9.929 -0.348 12.550 Atomic orbital electron populations 1.20805 0.84676 1.04918 1.04625 1.23207 1.00539 0.89135 0.94180 1.24192 0.90357 1.00374 0.98350 1.68406 1.10127 1.28945 1.08559 1.23465 1.02121 0.88112 0.99657 1.22460 0.90478 0.97767 0.92209 1.18156 0.93411 0.88828 0.97793 1.22034 1.40257 1.10147 0.91871 0.94196 1.27410 0.93201 0.92727 1.09286 1.70878 1.45491 1.39517 1.00563 0.82870 0.77222 0.76413 0.69248 1.19909 1.20033 1.19736 1.68193 1.08915 1.31266 1.11319 0.88424 0.91336 0.86775 0.77267 0.81369 0.95633 0.97478 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.96 10.19 71.24 0.73 -1.23 14 2 C 0.07 2.33 6.79 42.55 0.29 2.62 14 3 C 0.03 0.84 10.88 84.68 0.92 1.77 14 4 N -0.45 -16.24 10.50 -195.22 -2.05 -18.29 14 5 C 0.02 1.01 10.90 84.67 0.92 1.93 14 6 C 0.11 5.12 5.98 42.54 0.25 5.38 14 7 C 0.06 3.05 4.57 29.10 0.13 3.18 14 8 C -0.60 -35.28 9.09 25.60 0.23 -35.05 14 9 H 0.04 2.35 7.74 -2.91 -0.02 2.32 14 10 C -0.03 -1.61 5.46 84.66 0.46 -1.14 14 11 N -0.93 -56.95 13.65 21.45 0.29 -56.66 14 12 Si 1.12 50.59 29.90 68.60 2.05 52.64 14 13 H -0.27 -11.71 7.11 99.48 0.71 -11.00 14 14 H -0.28 -12.05 7.11 99.48 0.71 -11.34 14 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 14 16 N -0.48 -20.98 10.35 -171.50 -1.77 -22.76 14 17 H 0.10 1.71 8.14 -2.39 -0.02 1.69 14 18 H 0.07 1.62 8.14 -2.39 -0.02 1.60 14 19 H 0.11 1.53 8.09 -2.38 -0.02 1.51 14 20 H 0.21 3.90 8.06 -2.91 -0.02 3.88 14 21 H 0.17 6.59 8.06 -2.91 -0.02 6.57 14 22 H 0.03 1.38 7.98 -2.39 -0.02 1.36 14 23 H 0.01 0.41 8.01 -2.39 -0.02 0.39 14 24 H 0.26 16.00 7.22 -92.71 -0.67 15.33 14 Total: -1.00 -69.82 221.02 3.75 -66.08 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 1.29 Total: 1.54 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 3.94 Total: -22.55 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -3.53 Total: -97.71 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -69.82 3.75 -66.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766861.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.135 kcal (2) G-P(sol) polarization free energy of solvation -69.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds