Wall clock time and date at job start Mon Mar 30 2020 01:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30716 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47113 * 270.00081 * 3 2 1 5 5 H 1.48503 * 109.46902 * 30.00040 * 3 2 1 6 6 H 1.48495 * 109.47122 * 149.99823 * 3 2 1 7 7 C 1.40076 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.41288 * 120.00206 * 0.02562 * 7 2 1 10 10 N 1.32418 * 127.54181 * 0.04737 * 9 7 2 11 11 O 1.20853 * 112.21110 * 179.51907 * 10 9 7 12 12 C 1.34244 * 113.56699 * 0.59840 * 11 10 9 13 13 O 1.34080 * 146.82648 * 179.28241 * 12 11 10 14 14 C 1.34496 * 111.04757 * 180.02562 * 13 12 11 15 15 C 1.34533 * 109.43494 * 359.97438 * 14 13 12 16 16 C 1.39004 * 105.87439 * 359.51936 * 12 11 10 17 17 H 0.96999 * 120.00238 * 359.97438 * 1 2 3 18 18 H 1.07994 * 125.28419 * 179.97438 * 14 13 12 19 19 H 1.08002 * 126.95523 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.4886 2.0465 -1.4001 5 1 1.4385 2.6527 0.7001 6 1 3.5386 1.4403 0.7001 7 6 2.0075 -1.2131 0.0005 8 1 3.0875 -1.2131 0.0001 9 6 1.3011 -2.4367 0.0005 10 7 -0.0116 -2.6105 -0.0008 11 8 -0.3177 -3.7796 -0.0098 12 6 0.7367 -4.6105 -0.0033 13 8 1.1641 -5.8814 0.0038 14 6 2.5078 -5.9391 0.0078 15 6 3.0095 -4.6908 0.0028 16 6 1.8629 -3.7957 0.0010 17 1 -0.4850 0.8400 0.0004 18 1 3.0932 -6.8466 0.0140 19 1 4.0524 -4.4102 0.0046 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259817673.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:24 Heat of formation + Delta-G solvation = 80.878599 kcal Electronic energy + Delta-G solvation = -10102.742370 eV Core-core repulsion = 7977.394521 eV Total energy + Delta-G solvation = -2125.347849 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 179.037 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.75013 -40.65167 -34.09361 -32.07567 -30.17702 -28.66642 -26.25107 -22.43906 -20.67858 -20.21676 -17.77775 -16.42655 -16.36134 -15.43376 -14.77162 -14.09718 -13.55127 -12.78881 -12.26943 -11.45974 -11.34847 -11.00854 -10.73108 -10.22997 -10.00075 -9.22338 -9.14644 -7.87817 -7.60570 -6.70751 -4.63945 2.37085 2.53971 2.96243 3.07788 3.12032 3.15513 3.93106 4.00706 5.02954 5.25529 5.54802 6.03456 6.14267 6.34083 6.56078 6.79486 7.12957 7.30322 7.85388 8.20831 8.44976 8.76753 10.24666 10.42074 Molecular weight = 179.04amu Principal moments of inertia in cm(-1) A = 0.081795 B = 0.013613 C = 0.011719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.235410 B = 2056.416640 C = 2388.805245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.066 3.934 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.429 4.429 8 H 0.090 0.910 9 C 0.223 3.777 10 N -0.402 5.402 11 O 0.073 5.927 12 C 0.066 3.934 13 O -0.163 6.163 14 C -0.077 4.077 15 C -0.135 4.135 16 C -0.295 4.295 17 H 0.281 0.719 18 H 0.204 0.796 19 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.909 -3.966 0.005 6.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.156 4.156 3 Si 0.745 3.255 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.108 0.892 9 C 0.078 3.922 10 N -0.138 5.138 11 O 0.025 5.975 12 C -0.043 4.043 13 O -0.063 6.063 14 C -0.141 4.141 15 C -0.156 4.156 16 C -0.300 4.300 17 H 0.092 0.908 18 H 0.220 0.780 19 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.480 -3.495 0.012 4.932 hybrid contribution 1.278 0.493 -0.008 1.370 sum 4.758 -3.002 0.005 5.626 Atomic orbital electron populations 1.69815 1.07336 1.29129 1.32808 1.25976 0.94993 1.01353 0.93228 0.86093 0.80122 0.80030 0.79206 1.19350 1.20097 1.18484 1.18722 0.94256 0.87468 1.46255 0.89185 1.19977 0.87022 0.90437 0.94780 1.74454 1.13872 0.86714 1.38741 1.85123 1.27713 1.09749 1.74902 1.23251 0.92766 0.83358 1.04889 1.83473 1.23197 1.23116 1.76482 1.23820 0.78426 0.99091 1.12750 1.21449 0.98049 0.91076 1.04994 1.22140 0.93547 0.95249 1.19063 0.90825 0.77969 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.31 12.04 55.55 0.67 -20.64 13 2 C 0.07 1.75 5.50 -17.34 -0.10 1.65 13 3 Si 0.92 19.08 29.56 -169.99 -5.02 14.05 13 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 13 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 13 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 13 7 C -0.43 -11.91 9.47 -37.73 -0.36 -12.26 13 8 H 0.09 2.31 7.85 -52.48 -0.41 1.90 13 9 C 0.22 6.45 6.99 -82.88 -0.58 5.87 13 10 N -0.40 -11.95 10.44 33.30 0.35 -11.60 13 11 O 0.07 2.00 11.07 -4.03 -0.04 1.95 13 12 C 0.07 1.65 9.70 31.02 0.30 1.95 13 13 O -0.16 -3.47 10.54 -14.90 -0.16 -3.62 13 14 C -0.08 -1.34 12.03 29.42 0.35 -0.99 13 15 C -0.14 -2.72 11.12 -38.02 -0.42 -3.15 13 16 C -0.30 -7.59 7.65 -103.16 -0.79 -8.38 13 17 H 0.28 7.06 8.29 -40.82 -0.34 6.72 13 18 H 0.20 2.35 8.06 -52.49 -0.42 1.93 13 19 H 0.15 2.46 8.06 -52.49 -0.42 2.03 13 LS Contribution 189.69 15.07 2.86 2.86 Total: -1.00 -31.44 189.69 -3.33 -34.77 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -0.39 Total: -2.47 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -1.59 Total: -15.30 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 1.02 Total: -32.24 kcal Atomic # 8 Polarization: -1.47 SS G_CDS: -0.20 Total: -1.67 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 2.86 Total: 2.86 kcal Total: -31.44 -3.33 -34.77 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817673.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.650 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds