Wall clock time and date at job start Mon Mar 30 2020 01:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30716 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47113 * 270.00081 * 3 2 1 5 5 H 1.48503 * 109.46902 * 30.00040 * 3 2 1 6 6 H 1.48495 * 109.47122 * 149.99823 * 3 2 1 7 7 C 1.40076 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.41288 * 120.00206 * 0.02562 * 7 2 1 10 10 N 1.32418 * 127.54181 * 0.04737 * 9 7 2 11 11 O 1.20853 * 112.21110 * 179.51907 * 10 9 7 12 12 C 1.34244 * 113.56699 * 0.59840 * 11 10 9 13 13 O 1.34080 * 146.82648 * 179.28241 * 12 11 10 14 14 C 1.34496 * 111.04757 * 180.02562 * 13 12 11 15 15 C 1.34533 * 109.43494 * 359.97438 * 14 13 12 16 16 C 1.39004 * 105.87439 * 359.51936 * 12 11 10 17 17 H 0.96999 * 120.00238 * 359.97438 * 1 2 3 18 18 H 1.07994 * 125.28419 * 179.97438 * 14 13 12 19 19 H 1.08002 * 126.95523 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.4886 2.0465 -1.4001 5 1 1.4385 2.6527 0.7001 6 1 3.5386 1.4403 0.7001 7 6 2.0075 -1.2131 0.0005 8 1 3.0875 -1.2131 0.0001 9 6 1.3011 -2.4367 0.0005 10 7 -0.0116 -2.6105 -0.0008 11 8 -0.3177 -3.7796 -0.0098 12 6 0.7367 -4.6105 -0.0033 13 8 1.1641 -5.8814 0.0038 14 6 2.5078 -5.9391 0.0078 15 6 3.0095 -4.6908 0.0028 16 6 1.8629 -3.7957 0.0010 17 1 -0.4850 0.8400 0.0004 18 1 3.0932 -6.8466 0.0140 19 1 4.0524 -4.4102 0.0046 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259817673.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:24 Heat of formation + Delta-G solvation = 59.673712 kcal Electronic energy + Delta-G solvation = -10103.661883 eV Core-core repulsion = 7977.394521 eV Total energy + Delta-G solvation = -2126.267362 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 179.037 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -44.71640 -42.44105 -36.09576 -33.92246 -32.07143 -30.52387 -28.29458 -24.27265 -22.58832 -22.05142 -19.63030 -18.36745 -18.14295 -17.35434 -16.55630 -15.95330 -15.31807 -14.57118 -13.81591 -13.35286 -13.07645 -12.92324 -12.57652 -11.94334 -11.85141 -11.26215 -10.96273 -9.86128 -9.38867 -8.66774 -6.73900 0.57837 0.88624 1.13179 1.38837 1.47185 1.56682 2.09391 2.19791 3.21147 3.55660 3.81685 4.22900 4.33958 4.73780 4.86243 4.98685 5.20452 5.63444 6.12030 6.14362 6.42490 6.71624 8.30115 8.41409 Molecular weight = 179.04amu Principal moments of inertia in cm(-1) A = 0.081795 B = 0.013613 C = 0.011719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.235410 B = 2056.416640 C = 2388.805245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.016 3.984 3 Si 1.009 2.991 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.248 1.248 7 C -0.460 4.460 8 H 0.102 0.898 9 C 0.184 3.816 10 N -0.438 5.438 11 O 0.054 5.946 12 C 0.043 3.957 13 O -0.159 6.159 14 C -0.029 4.029 15 C -0.161 4.161 16 C -0.319 4.319 17 H 0.289 0.711 18 H 0.275 0.725 19 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 -4.574 0.019 8.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.201 4.201 3 Si 0.827 3.173 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.171 1.171 7 C -0.498 4.498 8 H 0.120 0.880 9 C 0.039 3.961 10 N -0.176 5.176 11 O 0.007 5.993 12 C -0.065 4.065 13 O -0.058 6.058 14 C -0.093 4.093 15 C -0.181 4.181 16 C -0.324 4.324 17 H 0.099 0.901 18 H 0.291 0.709 19 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.755 -4.151 0.026 7.096 hybrid contribution 0.616 0.470 -0.013 0.775 sum 6.371 -3.681 0.013 7.358 Atomic orbital electron populations 1.69935 1.09483 1.30753 1.33469 1.27179 0.95838 1.05458 0.91675 0.84810 0.78723 0.74018 0.79718 1.18320 1.19224 1.17129 1.19213 0.95057 0.88209 1.47292 0.87977 1.20631 0.87590 0.92574 0.95351 1.74492 1.15123 0.88033 1.39971 1.84937 1.28584 1.09817 1.75922 1.23218 0.91957 0.84866 1.06437 1.83545 1.25367 1.20860 1.76071 1.25208 0.76607 1.00682 1.06754 1.21894 0.98404 0.90700 1.07112 1.22703 0.96285 0.94284 1.19097 0.90097 0.70932 0.80415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.47 12.04 21.85 0.26 -46.21 13 2 C 0.02 0.86 5.50 85.30 0.47 1.32 13 3 Si 1.01 38.90 29.56 68.60 2.03 40.93 13 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 13 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 13 6 H -0.25 -8.95 7.11 99.48 0.71 -8.25 13 7 C -0.46 -26.09 9.47 23.47 0.22 -25.87 13 8 H 0.10 5.29 7.85 -2.91 -0.02 5.26 13 9 C 0.18 10.99 6.99 42.12 0.29 11.29 13 10 N -0.44 -27.33 10.44 -48.59 -0.51 -27.84 13 11 O 0.05 3.11 11.07 89.56 0.99 4.10 13 12 C 0.04 2.16 9.70 68.00 0.66 2.82 13 13 O -0.16 -6.38 10.54 17.55 0.18 -6.20 13 14 C -0.03 -0.89 12.03 66.97 0.81 -0.09 13 15 C -0.16 -6.03 11.12 23.28 0.26 -5.77 13 16 C -0.32 -16.47 7.65 -18.92 -0.14 -16.62 13 17 H 0.29 14.87 8.29 -92.71 -0.77 14.10 13 18 H 0.28 4.16 8.06 -2.91 -0.02 4.13 13 19 H 0.18 5.33 8.06 -2.91 -0.02 5.31 13 Total: -1.00 -72.34 189.69 6.81 -65.54 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 1.28 Total: 2.60 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 2.56 Total: -32.91 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -0.24 Total: -74.05 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 1.18 Total: -2.10 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -72.34 6.81 -65.54 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817673.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.209 kcal (2) G-P(sol) polarization free energy of solvation -72.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds