Wall clock time and date at job start Mon Mar 30 2020 01:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33492 * 1 3 3 C 1.46566 * 120.00179 * 2 1 4 4 N 1.32386 * 125.42940 * 359.70178 * 3 2 1 5 5 C 1.32274 * 110.03575 * 179.85552 * 4 3 2 6 6 C 1.50704 * 126.02272 * 180.12400 * 5 4 3 7 7 C 1.40109 * 107.95528 * 0.39907 * 5 4 3 8 8 C 1.39648 * 126.94117 * 179.76035 * 7 5 4 9 9 H 1.08011 * 119.99401 * 359.97356 * 8 7 5 10 10 C 1.40158 * 120.00400 * 179.97438 * 8 7 5 11 11 N 1.30798 * 119.99912 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99953 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47200 * 119.99982 * 12 10 8 15 15 H 1.48504 * 109.46645 * 239.99702 * 12 10 8 16 16 N 1.36934 * 125.43241 * 180.02562 * 3 2 1 17 17 H 0.96992 * 126.62592 * 359.97351 * 16 3 2 18 18 H 1.08002 * 120.00371 * 180.02562 * 1 2 3 19 19 H 1.08005 * 119.99860 * 359.71900 * 1 2 3 20 20 H 1.08004 * 119.99721 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.46734 * 270.32201 * 6 5 4 22 22 H 1.08994 * 109.47003 * 30.32269 * 6 5 4 23 23 H 1.08995 * 109.46822 * 150.32608 * 6 5 4 24 24 H 0.96993 * 119.99760 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3349 0.0000 0.0000 3 6 2.0678 1.2693 0.0000 4 7 1.5174 2.4733 -0.0056 5 6 2.4591 3.4021 -0.0007 6 6 2.2342 4.8923 -0.0019 7 6 3.7026 2.7565 -0.0005 8 6 4.9618 3.3603 -0.0007 9 1 5.0441 4.4373 -0.0014 10 6 6.1185 2.5690 0.0001 11 7 6.0187 1.2648 0.0015 12 14 7.8028 3.3768 0.0005 13 1 7.6437 4.8532 -0.0007 14 1 8.5514 2.9601 1.2134 15 1 8.5524 2.9591 -1.2115 16 7 3.4310 1.3989 -0.0005 17 1 4.0807 0.6787 -0.0006 18 1 -0.5401 -0.9353 0.0004 19 1 -0.5400 0.9354 0.0046 20 1 1.8749 -0.9354 -0.0004 21 1 2.1797 5.2506 -1.0299 22 1 1.3002 5.1191 0.5120 23 1 3.0602 5.3847 0.5112 24 1 6.8192 0.7172 0.0024 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259905516.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:43 Heat of formation + Delta-G solvation = 23.914699 kcal Electronic energy + Delta-G solvation = -10083.354468 eV Core-core repulsion = 8189.088235 eV Total energy + Delta-G solvation = -1894.266233 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.69256 -35.86838 -34.33909 -32.97894 -31.12867 -28.77799 -25.80960 -23.06858 -21.02020 -20.22308 -19.09110 -17.30091 -16.61745 -15.42608 -15.39619 -14.90426 -13.98733 -13.58749 -13.40561 -13.37288 -13.03033 -12.91260 -12.52625 -12.14696 -11.97814 -11.53635 -10.71363 -10.38848 -10.16624 -8.89346 -8.77200 -6.29163 0.86972 1.33338 1.39816 1.56640 1.98529 2.17047 2.86891 3.09171 3.24271 4.05596 4.37427 4.64939 4.83244 5.02350 5.07179 5.13735 5.29379 5.35942 5.60140 5.81579 5.85496 6.04451 6.46828 6.69133 6.76841 7.49667 7.82180 8.20663 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.056342 B = 0.013888 C = 0.011209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.849208 B = 2015.660290 C = 2497.365106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.080 4.080 3 C 0.072 3.928 4 N -0.478 5.478 5 C -0.180 4.180 6 C -0.024 4.024 7 C 0.178 3.822 8 C -0.460 4.460 9 H 0.104 0.896 10 C 0.025 3.975 11 N -0.863 5.863 12 Si 1.009 2.991 13 H -0.252 1.252 14 H -0.266 1.266 15 H -0.266 1.266 16 N -0.575 5.575 17 H 0.422 0.578 18 H 0.137 0.863 19 H 0.086 0.914 20 H 0.131 0.869 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 -0.547 0.056 1.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.099 4.099 3 C -0.177 4.177 4 N -0.198 5.198 5 C -0.313 4.313 6 C -0.082 4.082 7 C 0.059 3.941 8 C -0.495 4.495 9 H 0.122 0.878 10 C -0.187 4.187 11 N -0.494 5.494 12 Si 0.829 3.171 13 H -0.176 1.176 14 H -0.191 1.191 15 H -0.191 1.191 16 N -0.192 5.192 17 H 0.269 0.731 18 H 0.154 0.846 19 H 0.104 0.896 20 H 0.148 0.852 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.362 -0.616 0.050 0.716 hybrid contribution 1.780 -0.446 -0.014 1.835 sum 2.141 -1.063 0.036 2.391 Atomic orbital electron populations 1.24303 0.94152 1.02373 1.01095 1.20778 0.95249 0.91515 1.02391 1.21684 0.81499 0.94584 1.19935 1.69243 1.34602 0.98461 1.17450 1.21395 0.88353 0.96288 1.25270 1.19534 1.00588 0.87732 1.00301 1.19352 0.95497 0.82401 0.96875 1.19142 0.88447 0.95916 1.46029 0.87822 1.27004 1.06085 0.95006 0.90616 1.68925 1.34095 1.06731 1.39672 0.84705 0.74123 0.79510 0.78721 1.17556 1.19102 1.19128 1.43958 1.07039 1.08311 1.59845 0.73146 0.84557 0.89602 0.85156 0.93314 0.92800 0.91990 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.28 14.41 66.74 0.96 -5.32 14 2 C -0.08 -3.27 10.20 23.37 0.24 -3.03 14 3 C 0.07 3.74 7.86 135.72 1.07 4.81 14 4 N -0.48 -26.13 10.62 -174.90 -1.86 -27.99 14 5 C -0.18 -9.79 7.22 42.95 0.31 -9.48 14 6 C -0.02 -1.04 10.22 71.24 0.73 -0.31 14 7 C 0.18 9.98 6.74 38.89 0.26 10.24 14 8 C -0.46 -24.15 9.07 23.08 0.21 -23.94 14 9 H 0.10 5.10 7.33 -2.90 -0.02 5.08 14 10 C 0.02 1.17 5.50 85.31 0.47 1.64 14 11 N -0.86 -42.23 10.76 21.87 0.24 -42.00 14 12 Si 1.01 36.28 29.56 68.60 2.03 38.30 14 13 H -0.25 -8.75 7.11 99.48 0.71 -8.05 14 14 H -0.27 -9.22 7.11 99.48 0.71 -8.51 14 15 H -0.27 -9.24 7.11 99.48 0.71 -8.53 14 16 N -0.58 -31.12 5.91 -180.41 -1.07 -32.18 14 17 H 0.42 22.10 6.44 -92.71 -0.60 21.50 14 18 H 0.14 3.53 8.06 -2.91 -0.02 3.51 14 19 H 0.09 3.34 7.66 -2.91 -0.02 3.32 14 20 H 0.13 4.57 8.06 -2.91 -0.02 4.54 14 21 H 0.05 1.99 8.14 -2.39 -0.02 1.97 14 22 H 0.05 2.19 8.14 -2.39 -0.02 2.17 14 23 H 0.06 2.54 7.58 -2.39 -0.02 2.52 14 24 H 0.30 13.02 8.29 -92.71 -0.77 12.25 14 Total: -1.00 -61.67 219.09 4.19 -57.48 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.61 Total: 31.77 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.25 Total: -25.38 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -2.69 Total: -102.17 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.30 kcal Total: -61.67 4.19 -57.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905516.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.391 kcal (2) G-P(sol) polarization free energy of solvation -61.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds