Wall clock time and date at job start Mon Mar 30 2020 01:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.38603 * 120.07768 * 34.99806 * 12 2 1 14 14 C 1.38890 * 117.97062 * 179.97438 * 13 12 2 15 15 C 1.38611 * 117.96684 * 0.02562 * 14 13 12 16 16 N 1.31930 * 119.84388 * 359.97438 * 15 14 13 17 17 N 1.28353 * 122.19051 * 359.70948 * 16 15 14 18 18 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 19 19 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 21 21 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 22 22 H 1.07997 * 121.01579 * 0.02562 * 13 12 2 23 23 H 1.07992 * 121.01849 * 180.02562 * 14 13 12 24 24 H 1.07991 * 120.07347 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 6 2.0323 -0.7104 1.2306 13 6 1.3374 -1.7972 1.7374 14 6 1.8397 -2.4195 2.8730 15 6 3.0045 -1.9146 3.4295 16 7 3.5986 -0.8741 2.8773 17 7 3.1377 -0.3027 1.8244 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 0.7173 1.1669 -3.4844 22 1 0.4335 -2.1501 1.2634 23 1 1.3381 -3.2706 3.3092 24 1 3.4247 -2.3720 4.3129 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259944446.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:39 Heat of formation + Delta-G solvation = 26.008302 kcal Electronic energy + Delta-G solvation = -10109.772457 eV Core-core repulsion = 8215.597009 eV Total energy + Delta-G solvation = -1894.175447 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.77364 -36.82640 -34.04585 -33.71005 -30.99547 -27.36794 -25.61322 -25.04541 -22.14048 -18.49092 -18.19130 -17.73524 -16.84564 -15.81327 -15.69182 -14.68665 -14.61111 -13.73296 -13.56281 -12.92899 -12.77302 -12.67266 -12.23189 -12.12870 -11.39879 -11.27216 -11.01685 -10.58157 -10.39853 -10.32903 -8.15835 -6.31309 0.04130 0.23534 1.40568 1.42613 1.52610 2.39547 2.82279 3.11419 3.35852 3.84021 3.94896 4.02449 4.30619 4.57804 4.82855 4.99669 5.03549 5.07218 5.28026 5.51621 5.55633 5.81262 6.00029 6.20805 6.73468 7.36497 7.97735 8.89469 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.061915 B = 0.012619 C = 0.011910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.125954 B = 2218.411072 C = 2350.470483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.084 3.916 3 H 0.007 0.993 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.960 3.040 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.095 3.905 13 C -0.128 4.128 14 C -0.104 4.104 15 C 0.014 3.986 16 N -0.288 5.288 17 N -0.304 5.304 18 H 0.067 0.933 19 H 0.051 0.949 20 H 0.029 0.971 21 H 0.266 0.734 22 H 0.163 0.837 23 H 0.197 0.803 24 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -8.032 7.813 11.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.064 3.936 3 H 0.025 0.975 4 C -0.564 4.564 5 H 0.062 0.938 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.202 1.202 12 C -0.050 4.050 13 C -0.157 4.157 14 C -0.132 4.132 15 C -0.152 4.152 16 N -0.127 5.127 17 N -0.145 5.145 18 H 0.085 0.915 19 H 0.070 0.930 20 H 0.048 0.952 21 H 0.075 0.925 22 H 0.181 0.819 23 H 0.214 0.786 24 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.811 -6.811 7.730 10.334 hybrid contribution -0.731 -0.979 -1.008 1.584 sum -1.541 -7.790 6.722 10.404 Atomic orbital electron populations 1.21691 0.95498 1.00503 1.00488 1.17659 0.94101 0.94146 0.87736 0.97490 1.21070 1.32052 1.12429 0.90877 0.93832 1.25663 0.94990 0.95574 1.01645 1.69988 1.37013 1.23484 1.24463 0.85524 0.78694 0.78481 0.78755 1.19099 1.20571 1.20238 1.23497 0.91141 0.94360 0.95980 1.22607 1.01736 0.94753 0.96570 1.22902 0.95700 1.00410 0.94182 1.24892 0.94480 0.94101 1.01686 1.72824 1.27097 1.08596 1.04219 1.72873 1.11827 1.25590 1.04176 0.91465 0.92991 0.95215 0.92480 0.81923 0.78589 0.77385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.41 71.98 0.61 -5.10 14 2 C 0.08 4.38 2.63 -12.28 -0.03 4.34 14 3 H 0.01 0.42 8.14 -2.39 -0.02 0.40 14 4 C -0.53 -29.39 8.54 25.60 0.22 -29.17 14 5 H 0.04 2.46 7.74 -2.91 -0.02 2.44 14 6 C 0.02 1.16 5.31 84.65 0.45 1.61 14 7 N -0.91 -51.77 11.33 21.45 0.24 -51.53 14 8 Si 0.96 43.43 29.54 68.60 2.03 45.46 14 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 14 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 14 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 14 12 C 0.10 4.34 5.80 42.63 0.25 4.59 14 13 C -0.13 -4.45 9.27 22.51 0.21 -4.24 14 14 C -0.10 -2.67 10.21 22.52 0.23 -2.44 14 15 C 0.01 0.41 11.31 84.77 0.96 1.37 14 16 N -0.29 -11.65 11.50 -57.26 -0.66 -12.31 14 17 N -0.30 -14.57 11.43 -47.63 -0.54 -15.12 14 18 H 0.07 3.45 6.08 -2.38 -0.01 3.44 14 19 H 0.05 2.14 6.55 -2.39 -0.02 2.12 14 20 H 0.03 1.21 8.14 -2.39 -0.02 1.19 14 21 H 0.27 14.25 8.31 -92.71 -0.77 13.48 14 22 H 0.16 5.03 6.42 -2.91 -0.02 5.01 14 23 H 0.20 2.79 8.06 -2.91 -0.02 2.77 14 24 H 0.21 3.70 8.06 -2.92 -0.02 3.67 14 Total: -1.00 -67.41 214.11 5.15 -62.27 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.19 Total: 0.27 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 2.89 Total: -29.05 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -0.96 Total: -78.95 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.41 5.15 -62.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944446.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.278 kcal (2) G-P(sol) polarization free energy of solvation -67.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds