Wall clock time and date at job start Mon Mar 30 2020 01:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48491 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46937 * 299.99964 * 3 2 1 6 6 H 1.48498 * 109.46899 * 59.99413 * 3 2 1 7 7 C 1.37871 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00578 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.42916 * 302.53594 * 9 7 2 11 11 C 1.54552 * 110.48442 * 179.97438 * 9 7 2 12 12 C 1.54377 * 101.75329 * 266.31687 * 11 9 7 13 13 N 1.47141 * 105.56969 * 334.27924 * 12 11 9 14 14 N 1.40538 * 141.26332 * 197.00715 * 13 12 11 15 15 C 1.30708 * 108.28637 * 180.26416 * 14 13 12 16 16 C 1.39786 * 108.20810 * 0.19438 * 15 14 13 17 17 C 1.34718 * 111.01407 * 17.12898 * 13 12 11 18 18 H 0.97001 * 120.00413 * 0.02562 * 1 2 3 19 19 H 1.09007 * 110.97061 * 148.20291 * 11 9 7 20 20 H 1.08996 * 111.00795 * 24.44658 * 11 9 7 21 21 H 1.09001 * 110.22331 * 215.25683 * 12 11 9 22 22 H 1.08995 * 110.29682 * 93.34162 * 12 11 9 23 23 H 1.08002 * 125.89343 * 179.97438 * 15 14 13 24 24 H 1.08001 * 126.05209 * 179.71015 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5847 -2.5538 0.8614 11 6 2.2344 -3.6914 0.0005 12 6 2.3596 -3.9958 -1.5077 13 7 1.1097 -3.5105 -2.1137 14 7 0.3406 -3.6288 -3.2839 15 6 -0.7192 -2.8745 -3.1562 16 6 -0.6616 -2.2479 -1.9080 17 6 0.4688 -2.6627 -1.2857 18 1 -0.4851 0.8400 -0.0004 19 1 1.8153 -4.5429 0.5369 20 1 3.1976 -3.4034 0.4216 21 1 2.4644 -5.0688 -1.6682 22 1 3.2137 -3.4668 -1.9306 23 1 -1.5023 -2.7532 -3.8901 24 1 -1.3903 -1.5579 -1.5089 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260965264.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:33 Heat of formation + Delta-G solvation = 83.486115 kcal Electronic energy + Delta-G solvation = -10464.278452 eV Core-core repulsion = 8572.595429 eV Total energy + Delta-G solvation = -1891.683022 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.41863 -35.46553 -32.64840 -29.46764 -28.19353 -26.51183 -23.89009 -20.85142 -19.57134 -18.71356 -16.78746 -14.83710 -14.71082 -14.46390 -13.32830 -12.97990 -12.56824 -12.45131 -11.55364 -11.26227 -11.06552 -10.84738 -10.62589 -10.55426 -9.63157 -9.59421 -9.49573 -8.54336 -8.02359 -7.19045 -6.11403 -4.21536 3.10871 3.25632 3.33495 3.35637 3.40859 4.10303 4.36325 5.13476 5.29751 5.57936 5.79589 5.89955 6.07875 6.36496 6.43694 6.66209 6.86842 7.12683 7.34522 7.68936 7.77175 7.91523 8.01824 8.16162 8.81114 8.96385 9.44887 10.94548 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.048909 B = 0.017715 C = 0.014858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.358630 B = 1580.245184 C = 1884.094951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.092 3.908 10 H 0.055 0.945 11 C -0.130 4.130 12 C 0.145 3.855 13 N -0.412 5.412 14 N -0.322 5.322 15 C 0.028 3.972 16 C -0.263 4.263 17 C 0.138 3.862 18 H 0.263 0.737 19 H 0.062 0.938 20 H 0.089 0.911 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.170 0.830 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 -3.790 -0.301 4.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.071 3.929 10 H 0.072 0.928 11 C -0.169 4.169 12 C 0.023 3.977 13 N -0.196 5.196 14 N -0.143 5.143 15 C -0.156 4.156 16 C -0.292 4.292 17 C 0.010 3.990 18 H 0.073 0.927 19 H 0.081 0.919 20 H 0.107 0.893 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.188 0.812 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.397 -4.639 -1.189 5.356 hybrid contribution -0.083 1.651 0.257 1.673 sum 2.314 -2.988 -0.932 3.892 Atomic orbital electron populations 1.69974 1.05898 1.26812 1.47533 1.25004 0.94933 0.99342 0.94258 0.86486 0.80085 0.83494 0.77677 1.19724 1.20936 1.20802 1.20944 0.92691 0.89196 1.53145 0.91845 1.18201 0.91656 0.92902 0.90119 0.92751 1.22858 1.02213 0.99394 0.92424 1.22039 0.83475 0.98484 0.93679 1.50054 1.18781 1.37819 1.12908 1.77033 1.06023 1.26790 1.04498 1.23670 0.96742 0.97253 0.97965 1.20628 1.02553 1.10281 0.95755 1.23045 0.91928 0.88819 0.95231 0.92720 0.91887 0.89262 0.91354 0.90755 0.81248 0.84024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.93 11.57 55.43 0.64 -23.29 14 2 C 0.07 1.87 5.35 -17.82 -0.10 1.78 14 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 14 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 14 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 14 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 14 7 C -0.52 -13.71 8.51 -34.44 -0.29 -14.00 14 8 H 0.06 1.62 7.59 -52.48 -0.40 1.22 14 9 C 0.09 2.22 2.80 -91.75 -0.26 1.97 14 10 H 0.05 1.39 8.14 -51.93 -0.42 0.97 14 11 C -0.13 -2.47 6.68 -25.19 -0.17 -2.64 14 12 C 0.14 2.78 7.77 -2.97 -0.02 2.76 14 13 N -0.41 -9.73 4.85 -55.72 -0.27 -10.00 14 14 N -0.32 -7.63 12.70 30.59 0.39 -7.24 14 15 C 0.03 0.62 12.02 -17.45 -0.21 0.41 14 16 C -0.26 -6.51 10.07 -39.97 -0.40 -6.91 14 17 C 0.14 3.49 6.22 -81.93 -0.51 2.98 14 18 H 0.26 6.92 8.31 -40.82 -0.34 6.58 14 19 H 0.06 1.05 8.14 -51.92 -0.42 0.63 14 20 H 0.09 1.54 7.75 -51.93 -0.40 1.14 14 21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 14 22 H 0.07 1.38 8.14 -51.93 -0.42 0.96 14 23 H 0.17 3.01 8.06 -52.49 -0.42 2.58 14 24 H 0.14 3.57 7.54 -52.49 -0.40 3.17 14 LS Contribution 211.22 15.07 3.18 3.18 Total: -1.00 -29.96 211.22 -5.48 -35.44 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -2.45 Total: -0.20 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.96 Total: -13.66 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.76 Total: -40.53 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -29.96 -5.48 -35.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260965264.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.928 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds