Wall clock time and date at job start Mon Mar 30 2020 01:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48491 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46937 * 299.99964 * 3 2 1 6 6 H 1.48498 * 109.46899 * 59.99413 * 3 2 1 7 7 C 1.37871 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00578 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.42916 * 302.53594 * 9 7 2 11 11 C 1.54552 * 110.48442 * 179.97438 * 9 7 2 12 12 C 1.54377 * 101.75329 * 266.31687 * 11 9 7 13 13 N 1.47141 * 105.56969 * 334.27924 * 12 11 9 14 14 N 1.40538 * 141.26332 * 197.00715 * 13 12 11 15 15 C 1.30708 * 108.28637 * 180.26416 * 14 13 12 16 16 C 1.39786 * 108.20810 * 0.19438 * 15 14 13 17 17 C 1.34718 * 111.01407 * 17.12898 * 13 12 11 18 18 H 0.97001 * 120.00413 * 0.02562 * 1 2 3 19 19 H 1.09007 * 110.97061 * 148.20291 * 11 9 7 20 20 H 1.08996 * 111.00795 * 24.44658 * 11 9 7 21 21 H 1.09001 * 110.22331 * 215.25683 * 12 11 9 22 22 H 1.08995 * 110.29682 * 93.34162 * 12 11 9 23 23 H 1.08002 * 125.89343 * 179.97438 * 15 14 13 24 24 H 1.08001 * 126.05209 * 179.71015 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5847 -2.5538 0.8614 11 6 2.2344 -3.6914 0.0005 12 6 2.3596 -3.9958 -1.5077 13 7 1.1097 -3.5105 -2.1137 14 7 0.3406 -3.6288 -3.2839 15 6 -0.7192 -2.8745 -3.1562 16 6 -0.6616 -2.2479 -1.9080 17 6 0.4688 -2.6627 -1.2857 18 1 -0.4851 0.8400 -0.0004 19 1 1.8153 -4.5429 0.5369 20 1 3.1976 -3.4034 0.4216 21 1 2.4644 -5.0688 -1.6682 22 1 3.2137 -3.4668 -1.9306 23 1 -1.5023 -2.7532 -3.8901 24 1 -1.3903 -1.5579 -1.5089 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260965264.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:33 Heat of formation + Delta-G solvation = 64.402440 kcal Electronic energy + Delta-G solvation = -10465.105982 eV Core-core repulsion = 8572.595429 eV Total energy + Delta-G solvation = -1892.510553 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.19756 -37.19661 -34.59295 -31.30730 -29.93452 -28.34725 -25.75066 -22.55490 -21.29595 -20.55917 -18.70935 -16.71777 -16.41135 -16.30833 -14.99220 -14.70427 -14.41107 -14.18184 -13.40326 -13.05241 -12.87150 -12.61312 -12.36910 -12.21719 -11.50590 -11.42059 -11.30715 -10.56596 -9.78781 -9.06889 -8.12143 -6.28120 1.28954 1.42502 1.44476 1.53796 1.76294 2.24046 2.43783 3.16485 3.66208 4.13531 4.25109 4.25924 4.46929 4.74668 4.95050 4.99505 5.13478 5.34195 5.42872 5.75431 5.83663 6.11481 6.14127 6.25942 6.82343 7.16745 7.40880 8.93009 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.048909 B = 0.017715 C = 0.014858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.358630 B = 1580.245184 C = 1884.094951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.019 3.981 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.533 4.533 8 H 0.068 0.932 9 C 0.079 3.921 10 H 0.028 0.972 11 C -0.116 4.116 12 C 0.137 3.863 13 N -0.418 5.418 14 N -0.335 5.335 15 C 0.037 3.963 16 C -0.289 4.289 17 C 0.115 3.885 18 H 0.262 0.738 19 H 0.086 0.914 20 H 0.108 0.892 21 H 0.102 0.898 22 H 0.081 0.919 23 H 0.211 0.789 24 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 -4.302 -0.668 5.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.059 3.941 10 H 0.046 0.954 11 C -0.154 4.154 12 C 0.017 3.983 13 N -0.201 5.201 14 N -0.156 5.156 15 C -0.147 4.147 16 C -0.318 4.318 17 C -0.014 4.014 18 H 0.071 0.929 19 H 0.104 0.896 20 H 0.126 0.874 21 H 0.121 0.879 22 H 0.099 0.901 23 H 0.227 0.773 24 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.539 -5.171 -1.546 6.454 hybrid contribution -0.459 1.785 0.379 1.882 sum 3.080 -3.385 -1.167 4.723 Atomic orbital electron populations 1.70098 1.07113 1.27318 1.48573 1.25776 0.95715 1.02505 0.94278 0.85553 0.79323 0.79760 0.77307 1.18729 1.21639 1.20268 1.21307 0.93105 0.90254 1.52439 0.91340 1.18241 0.92352 0.94576 0.88944 0.95352 1.22827 1.01759 0.97906 0.92937 1.22380 0.82038 1.00619 0.93286 1.50414 1.19690 1.37514 1.12516 1.76971 1.06476 1.27251 1.04902 1.24230 0.97104 0.95721 0.97661 1.20761 1.02821 1.10971 0.97255 1.23225 0.92593 0.89628 0.95978 0.92900 0.89556 0.87413 0.87935 0.90127 0.77263 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.18 11.57 21.45 0.25 -49.93 14 2 C 0.02 1.04 5.35 84.65 0.45 1.49 14 3 Si 0.95 42.49 29.54 68.60 2.03 44.52 14 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 14 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 14 6 H -0.28 -12.00 7.11 99.48 0.71 -11.29 14 7 C -0.53 -27.74 8.51 25.60 0.22 -27.52 14 8 H 0.07 3.40 7.59 -2.91 -0.02 3.38 14 9 C 0.08 3.83 2.80 -11.53 -0.03 3.80 14 10 H 0.03 1.49 8.14 -2.39 -0.02 1.47 14 11 C -0.12 -4.13 6.68 31.59 0.21 -3.91 14 12 C 0.14 4.88 7.77 86.72 0.67 5.55 14 13 N -0.42 -19.06 4.85 -330.20 -1.60 -20.66 14 14 N -0.33 -15.26 12.70 -57.15 -0.73 -15.99 14 15 C 0.04 1.60 12.02 85.23 1.02 2.62 14 16 C -0.29 -14.35 10.07 22.02 0.22 -14.13 14 17 C 0.12 5.77 6.22 41.72 0.26 6.03 14 18 H 0.26 14.04 8.31 -92.71 -0.77 13.27 14 19 H 0.09 2.65 8.14 -2.38 -0.02 2.63 14 20 H 0.11 3.41 7.75 -2.39 -0.02 3.39 14 21 H 0.10 2.96 8.14 -2.39 -0.02 2.94 14 22 H 0.08 2.77 8.14 -2.39 -0.02 2.75 14 23 H 0.21 6.92 8.06 -2.91 -0.02 6.89 14 24 H 0.13 6.57 7.54 -2.91 -0.02 6.55 14 Total: -1.00 -63.22 211.22 4.16 -59.05 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.19 Total: 9.07 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 3.03 Total: -26.06 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -2.08 Total: -86.58 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.22 4.16 -59.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260965264.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.457 kcal (2) G-P(sol) polarization free energy of solvation -63.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds