Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99737 * 2 1 4 4 H 1.48499 * 109.47054 * 88.73111 * 3 2 1 5 5 H 1.48501 * 109.47328 * 208.73082 * 3 2 1 6 6 H 1.48502 * 109.47331 * 328.73019 * 3 2 1 7 7 C 1.37872 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00157 * 359.54729 * 7 2 1 9 9 C 1.50697 * 119.99756 * 179.54397 * 7 2 1 10 10 H 1.09005 * 110.43671 * 26.33385 * 9 7 2 11 11 C 1.54559 * 110.48604 * 148.86623 * 9 7 2 12 12 C 1.54590 * 101.65628 * 143.73655 * 11 9 7 13 13 N 1.47143 * 105.62282 * 334.41850 * 12 11 9 14 14 N 1.40542 * 141.25687 * 196.92232 * 13 12 11 15 15 C 1.30707 * 108.28213 * 180.32582 * 14 13 12 16 16 C 1.39781 * 108.21036 * 359.91799 * 15 14 13 17 17 C 1.34712 * 111.01568 * 17.06446 * 13 12 11 18 18 H 0.96995 * 120.00367 * 359.97438 * 1 2 3 19 19 H 1.09000 * 110.97463 * 261.93061 * 11 9 7 20 20 H 1.09005 * 110.96916 * 25.69435 * 11 9 7 21 21 H 1.08997 * 110.26361 * 215.34068 * 12 11 9 22 22 H 1.08994 * 110.20209 * 93.46360 * 12 11 9 23 23 H 1.08009 * 125.89330 * 179.97438 * 15 14 13 24 24 H 1.07998 * 126.05484 * 179.91035 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4697 2.0619 1.3997 5 1 3.5599 1.4327 -0.6730 6 1 1.4602 2.6448 -0.7267 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 0.0064 9 6 3.5115 -1.1940 -0.0109 10 1 3.8952 -0.2770 0.4363 11 6 4.0576 -2.4306 0.7383 12 6 5.3047 -2.7813 -0.1053 13 7 5.0345 -2.2516 -1.4512 14 7 5.4738 -2.3627 -2.7815 15 6 4.7589 -1.5538 -3.5184 16 6 3.8416 -0.9028 -2.6885 17 6 4.0318 -1.3524 -1.4241 18 1 -0.4850 0.8400 0.0004 19 1 4.3350 -2.1760 1.7612 20 1 3.3348 -3.2465 0.7233 21 1 5.4413 -3.8619 -0.1459 22 1 6.1902 -2.3056 0.3162 23 1 4.8590 -1.4133 -4.5846 24 1 3.1112 -0.1706 -2.9996 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260965265.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = 63.706092 kcal Electronic energy + Delta-G solvation = -10380.899974 eV Core-core repulsion = 8488.359225 eV Total energy + Delta-G solvation = -1892.540749 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.38707 -37.29272 -34.71224 -31.95888 -30.07277 -28.66056 -25.48570 -22.70677 -21.39707 -20.55216 -19.14960 -17.29045 -16.63074 -15.91456 -15.14571 -14.86152 -14.52570 -14.31308 -14.03477 -13.26652 -12.99825 -12.62090 -12.31040 -11.80789 -11.75783 -11.60178 -11.43870 -10.77836 -9.94400 -9.30379 -8.32154 -6.39496 1.08712 1.35979 1.41030 1.51428 1.61695 2.02875 2.34233 3.01441 3.51793 4.04007 4.07389 4.20327 4.33907 4.60186 4.67474 4.79922 4.93803 5.21263 5.23302 5.42369 5.57611 5.91992 6.06636 6.22081 6.67528 6.98484 7.27595 8.83863 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.048596 B = 0.017813 C = 0.015452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.042902 B = 1571.533619 C = 1811.607265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.025 3.975 3 Si 0.936 3.064 4 H -0.258 1.258 5 H -0.250 1.250 6 H -0.287 1.287 7 C -0.508 4.508 8 H 0.036 0.964 9 C 0.051 3.949 10 H 0.068 0.932 11 C -0.113 4.113 12 C 0.127 3.873 13 N -0.413 5.413 14 N -0.324 5.324 15 C 0.050 3.950 16 C -0.302 4.302 17 C 0.083 3.917 18 H 0.269 0.731 19 H 0.123 0.877 20 H 0.071 0.929 21 H 0.100 0.900 22 H 0.106 0.894 23 H 0.220 0.780 24 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.119 -0.702 0.110 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.183 1.183 5 H -0.173 1.173 6 H -0.213 1.213 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.031 3.969 10 H 0.085 0.915 11 C -0.152 4.152 12 C 0.008 3.992 13 N -0.196 5.196 14 N -0.145 5.145 15 C -0.134 4.134 16 C -0.332 4.332 17 C -0.047 4.047 18 H 0.078 0.922 19 H 0.141 0.859 20 H 0.089 0.911 21 H 0.118 0.882 22 H 0.124 0.876 23 H 0.236 0.764 24 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.098 -1.643 0.170 11.221 hybrid contribution -1.069 1.311 -0.308 1.719 sum 10.030 -0.331 -0.138 10.036 Atomic orbital electron populations 1.70026 1.08244 1.28374 1.51245 1.25880 0.95367 1.02822 0.93320 0.85872 0.79717 0.78923 0.79514 1.18299 1.17327 1.21263 1.20916 0.89479 0.93276 1.50968 0.94552 1.18723 0.95055 0.97280 0.85856 0.91469 1.22880 0.94588 0.97724 0.99960 1.22653 1.00188 1.01027 0.75345 1.50515 1.28145 1.34434 1.06487 1.77058 1.25478 1.25809 0.86108 1.24289 0.93735 0.94285 1.01120 1.20815 1.08531 1.11744 0.92063 1.23583 0.89962 0.91861 0.99300 0.92214 0.85922 0.91072 0.88162 0.87569 0.76410 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.74 13.96 21.45 0.30 -56.44 14 2 C 0.03 1.40 5.47 84.65 0.46 1.86 14 3 Si 0.94 42.35 27.08 68.60 1.86 44.21 14 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 14 5 H -0.25 -10.87 6.73 99.48 0.67 -10.20 14 6 H -0.29 -12.98 7.11 99.48 0.71 -12.27 14 7 C -0.51 -27.75 8.90 25.60 0.23 -27.52 14 8 H 0.04 2.22 7.94 -2.91 -0.02 2.20 14 9 C 0.05 2.28 2.36 -11.53 -0.03 2.25 14 10 H 0.07 2.87 5.53 -2.38 -0.01 2.85 14 11 C -0.11 -3.81 6.70 31.67 0.21 -3.60 14 12 C 0.13 3.88 7.78 86.80 0.68 4.56 14 13 N -0.41 -16.71 4.85 -329.85 -1.60 -18.31 14 14 N -0.32 -13.09 12.70 -57.15 -0.73 -13.82 14 15 C 0.05 1.89 12.02 85.23 1.02 2.91 14 16 C -0.30 -13.24 10.81 22.02 0.24 -13.00 14 17 C 0.08 3.74 6.80 41.72 0.28 4.02 14 18 H 0.27 15.16 8.31 -92.71 -0.77 14.39 14 19 H 0.12 3.22 8.14 -2.39 -0.02 3.20 14 20 H 0.07 2.55 7.82 -2.38 -0.02 2.53 14 21 H 0.10 2.62 8.14 -2.39 -0.02 2.60 14 22 H 0.11 2.61 8.14 -2.39 -0.02 2.59 14 23 H 0.22 5.92 8.06 -2.91 -0.02 5.90 14 24 H 0.13 5.68 8.06 -2.91 -0.02 5.65 14 Total: -1.00 -67.74 210.52 4.08 -63.66 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.15 Total: 9.22 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 3.10 Total: -28.51 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.03 Total: -88.57 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.86 Total: 44.21 kcal Total: -67.74 4.08 -63.66 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260965265.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.362 kcal (2) G-P(sol) polarization free energy of solvation -67.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds