Wall clock time and date at job start Mon Mar 30 2020 01:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38411 * 119.99754 * 2 1 4 4 C 1.39214 * 120.99871 * 0.02562 * 3 2 1 5 5 C 1.37989 * 119.32345 * 179.97438 * 4 3 2 6 6 N 1.32299 * 121.45583 * 0.02562 * 5 4 3 7 7 C 1.31454 * 122.22566 * 359.97194 * 6 5 4 8 8 C 1.40656 * 120.46606 * 359.71950 * 7 6 5 9 9 C 1.41103 * 120.73900 * 180.28280 * 8 7 6 10 10 H 1.08003 * 120.00337 * 205.18282 * 9 8 7 11 11 C 1.39942 * 119.99843 * 25.18905 * 9 8 7 12 12 N 1.30872 * 119.99778 * 14.82044 * 11 9 8 13 13 Si 1.86794 * 119.99768 * 194.82316 * 11 9 8 14 14 H 1.48494 * 109.47541 * 60.00008 * 13 11 9 15 15 H 1.48507 * 109.46851 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47475 * 299.99588 * 13 11 9 17 17 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 18 18 H 1.08993 * 109.47043 * 60.00118 * 1 2 3 19 19 H 1.08994 * 109.46873 * 299.99673 * 1 2 3 20 20 H 0.96998 * 120.00280 * 180.02562 * 2 1 3 21 21 H 1.07999 * 120.34034 * 359.97285 * 4 3 2 22 22 H 1.08000 * 119.27181 * 179.97438 * 5 4 3 23 23 H 1.08000 * 119.76928 * 180.02562 * 7 6 5 24 24 H 0.96997 * 119.99407 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1570 1.1987 0.0000 4 6 1.4820 2.4163 0.0005 5 6 2.2066 3.5906 0.0011 6 7 3.5295 3.5856 0.0006 7 6 4.2263 2.4709 0.0001 8 6 3.5763 1.2236 0.0060 9 6 4.3185 0.0236 0.0115 10 1 3.8827 -0.8828 -0.3821 11 6 5.6194 0.0078 0.5272 12 7 6.0452 1.0056 1.2592 13 14 6.7479 -1.4374 0.1708 14 1 6.9419 -1.5640 -1.2960 15 1 8.0612 -1.2135 0.8269 16 1 6.1376 -2.6841 0.6988 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 0.5138 0.8900 20 1 1.9501 -0.8400 -0.0004 21 1 0.4023 2.4414 0.0005 22 1 1.6821 4.5347 0.0010 23 1 5.3055 2.5131 0.0001 24 1 6.9467 0.9945 1.6169 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261002187.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:45 Heat of formation + Delta-G solvation = 23.837724 kcal Electronic energy + Delta-G solvation = -10173.830489 eV Core-core repulsion = 8279.560918 eV Total energy + Delta-G solvation = -1894.269571 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.38342 -34.90362 -33.81980 -29.94213 -29.17139 -25.70589 -24.99864 -21.32180 -20.49407 -17.30960 -16.62292 -15.28146 -14.82745 -13.72529 -13.53466 -13.30496 -12.81583 -12.57688 -12.04786 -11.53596 -11.38009 -11.16737 -10.68362 -10.59212 -9.83705 -9.61903 -9.18075 -7.81458 -7.45919 -6.82257 -6.62492 -4.22336 2.76986 3.07779 3.08150 3.11222 3.28355 3.94083 4.54717 4.74877 5.64635 5.77077 6.00654 6.10462 6.20076 6.29692 6.69043 6.94654 7.16237 7.34503 7.45095 7.54898 8.06657 8.31632 8.49969 8.70326 8.87630 8.94743 9.94077 10.24736 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.045132 B = 0.016462 C = 0.012451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.255450 B = 1700.433187 C = 2248.277633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.748 5.748 3 C 0.138 3.862 4 C -0.228 4.228 5 C 0.004 3.996 6 N -0.510 5.510 7 C 0.054 3.946 8 C 0.018 3.982 9 C -0.457 4.457 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.801 5.801 13 Si 0.911 3.089 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.268 1.268 17 H 0.058 0.942 18 H 0.038 0.962 19 H 0.039 0.961 20 H 0.397 0.603 21 H 0.097 0.903 22 H 0.116 0.884 23 H 0.152 0.848 24 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -3.841 -1.415 5.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.382 5.382 3 C 0.031 3.969 4 C -0.254 4.254 5 C -0.154 4.154 6 N -0.220 5.220 7 C -0.106 4.106 8 C 0.011 3.989 9 C -0.489 4.489 10 H 0.090 0.910 11 C -0.143 4.143 12 N -0.427 5.427 13 Si 0.736 3.264 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.193 1.193 17 H 0.077 0.923 18 H 0.057 0.943 19 H 0.057 0.943 20 H 0.232 0.768 21 H 0.115 0.885 22 H 0.134 0.866 23 H 0.169 0.831 24 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.721 -2.918 -1.269 4.896 hybrid contribution 0.121 -1.823 -0.001 1.827 sum -3.601 -4.740 -1.270 6.087 Atomic orbital electron populations 1.21262 0.82379 1.00474 0.99937 1.43723 1.03841 1.06043 1.84613 1.18144 0.91606 0.85464 1.01660 1.20972 0.98205 0.92740 1.13496 1.21491 0.90312 0.95437 1.08138 1.67174 1.07944 1.32630 1.14293 1.22821 0.99513 0.86104 1.02183 1.18239 0.88942 0.95648 0.96022 1.19054 0.97972 0.95532 1.36303 0.90975 1.25820 0.98461 0.97303 0.92707 1.69766 1.18298 1.30864 1.23810 0.86327 0.79055 0.81333 0.79699 1.18963 1.20336 1.19278 0.92308 0.94308 0.94280 0.76831 0.88497 0.86642 0.83097 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.67 9.97 59.85 0.60 2.26 14 2 N -0.75 -15.34 5.79 -64.80 -0.38 -15.72 14 3 C 0.14 3.39 6.72 -83.11 -0.56 2.83 14 4 C -0.23 -5.32 9.36 -39.31 -0.37 -5.69 14 5 C 0.00 0.09 11.15 -17.44 -0.19 -0.11 14 6 N -0.51 -13.74 10.33 -12.68 -0.13 -13.87 14 7 C 0.05 1.51 9.89 -16.80 -0.17 1.34 14 8 C 0.02 0.49 5.60 -106.48 -0.60 -0.11 14 9 C -0.46 -11.88 8.58 -37.86 -0.32 -12.20 14 10 H 0.07 1.75 6.76 -52.48 -0.35 1.40 14 11 C 0.07 1.84 5.21 -17.32 -0.09 1.75 14 12 N -0.80 -20.94 10.85 55.55 0.60 -20.34 14 13 Si 0.91 18.57 29.58 -169.99 -5.03 13.54 14 14 H -0.26 -5.37 7.11 56.52 0.40 -4.97 14 15 H -0.28 -5.57 7.11 56.52 0.40 -5.17 14 16 H -0.27 -5.36 7.11 56.52 0.40 -4.96 14 17 H 0.06 0.74 8.14 -51.93 -0.42 0.32 14 18 H 0.04 0.59 7.99 -51.93 -0.41 0.18 14 19 H 0.04 0.61 7.98 -51.93 -0.41 0.20 14 20 H 0.40 7.89 7.19 -40.82 -0.29 7.60 14 21 H 0.10 1.97 6.87 -52.49 -0.36 1.61 14 22 H 0.12 2.44 8.06 -52.49 -0.42 2.02 14 23 H 0.15 4.30 6.11 -52.49 -0.32 3.98 14 24 H 0.28 6.74 8.30 -40.82 -0.34 6.40 14 LS Contribution 211.75 15.07 3.19 3.19 Total: -1.00 -28.94 211.75 -5.58 -34.52 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -2.14 Total: 8.59 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.70 Total: -9.93 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.10 Total: -49.92 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -28.94 -5.58 -34.52 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002187.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.361 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds