Wall clock time and date at job start Mon Mar 30 2020 01:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38411 * 119.99754 * 2 1 4 4 C 1.39214 * 120.99871 * 0.02562 * 3 2 1 5 5 C 1.37989 * 119.32345 * 179.97438 * 4 3 2 6 6 N 1.32299 * 121.45583 * 0.02562 * 5 4 3 7 7 C 1.31454 * 122.22566 * 359.97194 * 6 5 4 8 8 C 1.40656 * 120.46606 * 359.71950 * 7 6 5 9 9 C 1.41103 * 120.73900 * 180.28280 * 8 7 6 10 10 H 1.08003 * 120.00337 * 205.18282 * 9 8 7 11 11 C 1.39942 * 119.99843 * 25.18905 * 9 8 7 12 12 N 1.30872 * 119.99778 * 14.82044 * 11 9 8 13 13 Si 1.86794 * 119.99768 * 194.82316 * 11 9 8 14 14 H 1.48494 * 109.47541 * 60.00008 * 13 11 9 15 15 H 1.48507 * 109.46851 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47475 * 299.99588 * 13 11 9 17 17 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 18 18 H 1.08993 * 109.47043 * 60.00118 * 1 2 3 19 19 H 1.08994 * 109.46873 * 299.99673 * 1 2 3 20 20 H 0.96998 * 120.00280 * 180.02562 * 2 1 3 21 21 H 1.07999 * 120.34034 * 359.97285 * 4 3 2 22 22 H 1.08000 * 119.27181 * 179.97438 * 5 4 3 23 23 H 1.08000 * 119.76928 * 180.02562 * 7 6 5 24 24 H 0.96997 * 119.99407 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1570 1.1987 0.0000 4 6 1.4820 2.4163 0.0005 5 6 2.2066 3.5906 0.0011 6 7 3.5295 3.5856 0.0006 7 6 4.2263 2.4709 0.0001 8 6 3.5763 1.2236 0.0060 9 6 4.3185 0.0236 0.0115 10 1 3.8827 -0.8828 -0.3821 11 6 5.6194 0.0078 0.5272 12 7 6.0452 1.0056 1.2592 13 14 6.7479 -1.4374 0.1708 14 1 6.9419 -1.5640 -1.2960 15 1 8.0612 -1.2135 0.8269 16 1 6.1376 -2.6841 0.6988 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 0.5138 0.8900 20 1 1.9501 -0.8400 -0.0004 21 1 0.4023 2.4414 0.0005 22 1 1.6821 4.5347 0.0010 23 1 5.3055 2.5131 0.0001 24 1 6.9467 0.9945 1.6169 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002187.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:45 Heat of formation + Delta-G solvation = 4.137471 kcal Electronic energy + Delta-G solvation = -10174.684756 eV Core-core repulsion = 8279.560918 eV Total energy + Delta-G solvation = -1895.123838 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.26551 -36.61368 -35.71289 -31.81290 -30.99135 -27.49315 -26.65662 -23.22322 -22.33841 -19.22826 -18.39071 -17.04382 -16.60243 -15.50720 -15.11681 -15.01112 -14.54894 -14.33798 -13.85139 -13.19142 -12.98772 -12.79458 -12.51004 -12.25594 -11.65820 -11.38335 -10.98786 -9.78695 -9.41383 -8.66311 -8.42163 -6.17750 0.90465 1.22920 1.41420 1.52975 1.57314 2.23202 2.83443 2.99258 3.82446 4.33711 4.44979 4.51786 4.75867 4.82508 4.94853 5.08137 5.26588 5.43553 5.55148 5.67367 6.16747 6.37625 6.64787 6.86762 7.04218 7.15302 7.97092 8.40406 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.045132 B = 0.016462 C = 0.012451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.255450 B = 1700.433187 C = 2248.277633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.746 5.746 3 C 0.139 3.861 4 C -0.234 4.234 5 C 0.000 4.000 6 N -0.535 5.535 7 C 0.020 3.980 8 C -0.014 4.014 9 C -0.481 4.481 10 H 0.083 0.917 11 C 0.030 3.970 12 N -0.837 5.837 13 Si 0.988 3.012 14 H -0.262 1.262 15 H -0.274 1.274 16 H -0.257 1.257 17 H 0.094 0.906 18 H 0.048 0.952 19 H 0.044 0.956 20 H 0.398 0.602 21 H 0.132 0.868 22 H 0.148 0.852 23 H 0.131 0.869 24 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 -5.218 -1.644 7.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.379 5.379 3 C 0.030 3.970 4 C -0.261 4.261 5 C -0.158 4.158 6 N -0.247 5.247 7 C -0.138 4.138 8 C -0.021 4.021 9 C -0.512 4.512 10 H 0.101 0.899 11 C -0.184 4.184 12 N -0.464 5.464 13 Si 0.809 3.191 14 H -0.187 1.187 15 H -0.198 1.198 16 H -0.181 1.181 17 H 0.113 0.887 18 H 0.066 0.934 19 H 0.062 0.938 20 H 0.233 0.767 21 H 0.150 0.850 22 H 0.165 0.835 23 H 0.148 0.852 24 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.028 -4.319 -1.497 6.796 hybrid contribution 0.372 -1.358 0.079 1.410 sum -4.656 -5.677 -1.418 7.478 Atomic orbital electron populations 1.21554 0.79262 1.03198 1.00489 1.43938 1.05861 1.04760 1.83309 1.18390 0.91182 0.87454 1.00021 1.21279 0.99939 0.91876 1.12960 1.22101 0.89684 0.97435 1.06624 1.67127 1.09421 1.32564 1.15566 1.22597 0.98968 0.87192 1.05046 1.18556 0.90691 0.95735 0.97109 1.19363 0.99080 0.95682 1.37078 0.89909 1.26760 0.99616 1.00153 0.91837 1.69861 1.18915 1.32976 1.24646 0.85164 0.76792 0.77743 0.79433 1.18651 1.19823 1.18089 0.88727 0.93379 0.93776 0.76708 0.85002 0.83489 0.85180 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.76 9.97 127.77 1.27 4.03 14 2 N -0.75 -28.91 5.79 -358.93 -2.08 -30.99 14 3 C 0.14 6.67 6.72 39.26 0.26 6.93 14 4 C -0.23 -10.47 9.36 22.45 0.21 -10.26 14 5 C 0.00 0.00 11.15 84.56 0.94 0.94 14 6 N -0.54 -29.29 10.33 -194.02 -2.00 -31.30 14 7 C 0.02 1.16 9.89 85.34 0.84 2.01 14 8 C -0.01 -0.78 5.60 -21.07 -0.12 -0.90 14 9 C -0.48 -25.18 8.58 23.39 0.20 -24.98 14 10 H 0.08 3.99 6.76 -2.91 -0.02 3.97 14 11 C 0.03 1.49 5.21 85.25 0.44 1.93 14 12 N -0.84 -44.90 10.85 21.83 0.24 -44.67 14 13 Si 0.99 37.89 29.58 68.60 2.03 39.92 14 14 H -0.26 -9.85 7.11 99.48 0.71 -9.14 14 15 H -0.27 -10.16 7.11 99.48 0.71 -9.46 14 16 H -0.26 -9.32 7.11 99.48 0.71 -8.61 14 17 H 0.09 1.97 8.14 -2.39 -0.02 1.95 14 18 H 0.05 1.28 7.99 -2.39 -0.02 1.26 14 19 H 0.04 1.21 7.98 -2.39 -0.02 1.19 14 20 H 0.40 15.08 7.19 -92.71 -0.67 14.41 14 21 H 0.13 4.87 6.87 -2.91 -0.02 4.85 14 22 H 0.15 5.88 8.06 -2.91 -0.02 5.86 14 23 H 0.13 7.84 6.11 -2.91 -0.02 7.82 14 24 H 0.29 14.04 8.30 -92.71 -0.77 13.27 14 Total: -1.00 -62.75 211.75 2.79 -59.96 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.55 Total: 27.37 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.06 Total: -20.29 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -3.85 Total: -106.95 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -62.75 2.79 -59.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002187.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.098 kcal (2) G-P(sol) polarization free energy of solvation -62.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds