Wall clock time and date at job start Mon Mar 30 2020 01:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99817 * 2 1 4 4 H 1.48496 * 109.47139 * 240.00155 * 3 2 1 5 5 H 1.48496 * 109.47023 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46698 * 120.00428 * 3 2 1 7 7 C 1.37879 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.50691 * 119.99806 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.39453 * 299.21321 * 9 7 2 11 11 C 1.54476 * 110.35883 * 176.98720 * 9 7 2 12 12 C 1.54468 * 101.89405 * 215.61057 * 11 9 7 13 13 C 1.51379 * 104.99185 * 25.55175 * 12 11 9 14 14 N 1.34488 * 141.85965 * 163.50616 * 13 12 11 15 15 C 1.30410 * 109.30295 * 180.02562 * 14 13 12 16 16 N 1.34997 * 108.70222 * 359.60470 * 15 14 13 17 17 H 0.97001 * 126.41850 * 180.27311 * 16 15 14 18 18 C 1.34423 * 110.27933 * 343.11689 * 13 12 11 19 19 H 0.97001 * 119.99760 * 0.02562 * 1 2 3 20 20 H 1.08996 * 110.95171 * 97.46247 * 11 9 7 21 21 H 1.08997 * 110.96488 * 333.76980 * 11 9 7 22 22 H 1.08994 * 110.34109 * 266.66994 * 12 11 9 23 23 H 1.08998 * 110.42036 * 144.47318 * 12 11 9 24 24 H 1.08002 * 125.65309 * 179.87546 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6297 -2.5789 0.8914 11 6 2.2348 -3.6876 -0.0773 12 6 1.4514 -4.6935 -0.9493 13 6 0.5124 -3.8442 -1.7791 14 7 -0.2651 -3.8896 -2.8755 15 6 -0.8439 -2.7329 -3.0418 16 7 -0.4583 -1.9086 -2.0447 17 1 -0.7379 -0.9885 -1.9175 18 6 0.4011 -2.6154 -1.2454 19 1 -0.4850 0.8401 -0.0004 20 1 2.4276 -4.0986 0.9136 21 1 3.1652 -3.3931 -0.5627 22 1 0.8851 -5.3799 -0.3199 23 1 2.1322 -5.2474 -1.5957 24 1 -1.5230 -2.4780 -3.8420 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261009650.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:52 Heat of formation + Delta-G solvation = 54.507125 kcal Electronic energy + Delta-G solvation = -10460.289952 eV Core-core repulsion = 8567.350306 eV Total energy + Delta-G solvation = -1892.939646 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.02570 -35.57610 -32.82186 -30.83499 -27.56972 -26.67714 -23.68199 -20.93089 -19.66600 -18.45585 -16.78703 -16.09189 -14.71311 -14.28157 -13.49570 -13.02534 -12.41028 -12.21884 -11.83965 -11.39188 -11.03869 -10.82558 -10.66057 -10.10907 -9.78618 -9.30154 -8.95704 -8.65443 -8.45737 -6.91146 -6.28051 -4.32800 3.18684 3.23579 3.26706 3.41616 4.13584 4.24741 4.38423 5.03781 5.17382 5.90862 5.98414 6.08778 6.45764 6.51187 6.71219 6.87160 6.99438 7.14337 7.47893 7.65872 7.70909 7.85292 8.15330 8.65207 8.81731 9.18771 9.33670 10.80945 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.052551 B = 0.017422 C = 0.014123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.689414 B = 1606.735494 C = 1982.035825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.064 0.936 9 C 0.105 3.895 10 H 0.047 0.953 11 C -0.108 4.108 12 C -0.021 4.021 13 C -0.097 4.097 14 N -0.490 5.490 15 C 0.128 3.872 16 N -0.528 5.528 17 H 0.421 0.579 18 C 0.062 3.938 19 H 0.264 0.736 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -1.766 -1.274 2.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.082 0.918 9 C 0.086 3.914 10 H 0.065 0.935 11 C -0.147 4.147 12 C -0.060 4.060 13 C -0.225 4.225 14 N -0.211 5.211 15 C -0.154 4.154 16 N -0.131 5.131 17 H 0.263 0.737 18 C -0.059 4.059 19 H 0.073 0.927 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.213 -2.339 -1.813 2.967 hybrid contribution 0.126 2.242 0.329 2.270 sum 0.339 -0.097 -1.484 1.525 Atomic orbital electron populations 1.69777 1.06092 1.27019 1.51450 1.25038 0.95001 0.99489 0.94736 0.86536 0.79619 0.82393 0.78880 1.20207 1.21194 1.19927 1.21341 0.93332 0.90180 1.48960 0.91788 1.18024 0.90830 0.93431 0.89125 0.93482 1.22435 0.98541 0.95455 0.98254 1.20219 0.94697 0.95955 0.95079 1.21325 1.06558 0.96889 0.97686 1.69409 1.11361 1.22112 1.18223 1.24513 1.06451 0.87338 0.97096 1.42954 1.34910 1.14976 1.20303 0.73672 1.22535 0.94349 0.91156 0.97891 0.92661 0.91744 0.91562 0.92143 0.92580 0.79115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.77 10.70 55.43 0.59 -23.18 14 2 C 0.06 1.48 5.32 -17.82 -0.09 1.39 14 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.23 14 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 14 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 14 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 14 7 C -0.50 -13.13 8.53 -34.44 -0.29 -13.42 14 8 H 0.06 1.64 7.63 -52.49 -0.40 1.24 14 9 C 0.11 2.60 2.83 -91.91 -0.26 2.34 14 10 H 0.05 1.24 8.14 -51.93 -0.42 0.81 14 11 C -0.11 -2.22 6.63 -25.19 -0.17 -2.38 14 12 C -0.02 -0.42 6.79 -26.78 -0.18 -0.60 14 13 C -0.10 -2.33 7.98 -82.44 -0.66 -2.99 14 14 N -0.49 -11.58 11.26 -10.67 -0.12 -11.70 14 15 C 0.13 2.71 13.04 -90.49 -1.18 1.53 14 16 N -0.53 -12.26 5.93 -10.20 -0.06 -12.32 14 17 H 0.42 9.59 7.19 -40.82 -0.29 9.30 14 18 C 0.06 1.56 6.59 -81.39 -0.54 1.02 14 19 H 0.26 6.62 8.31 -40.82 -0.34 6.28 14 20 H 0.06 1.15 8.14 -51.93 -0.42 0.72 14 21 H 0.07 1.34 7.79 -51.93 -0.40 0.94 14 22 H 0.06 1.12 8.14 -51.93 -0.42 0.69 14 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 14 24 H 0.19 3.07 8.06 -52.49 -0.42 2.65 14 LS Contribution 208.00 15.07 3.13 3.13 Total: -1.00 -29.11 208.00 -7.19 -36.30 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -2.35 Total: 5.64 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -3.37 Total: -13.12 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.41 Total: -47.19 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -29.11 -7.19 -36.30 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009650.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.811 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds