Wall clock time and date at job start Mon Mar 30 2020 01:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99817 * 2 1 4 4 H 1.48496 * 109.47139 * 240.00155 * 3 2 1 5 5 H 1.48496 * 109.47023 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46698 * 120.00428 * 3 2 1 7 7 C 1.37879 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.50691 * 119.99806 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.39453 * 299.21321 * 9 7 2 11 11 C 1.54476 * 110.35883 * 176.98720 * 9 7 2 12 12 C 1.54468 * 101.89405 * 215.61057 * 11 9 7 13 13 C 1.51379 * 104.99185 * 25.55175 * 12 11 9 14 14 N 1.34488 * 141.85965 * 163.50616 * 13 12 11 15 15 C 1.30410 * 109.30295 * 180.02562 * 14 13 12 16 16 N 1.34997 * 108.70222 * 359.60470 * 15 14 13 17 17 H 0.97001 * 126.41850 * 180.27311 * 16 15 14 18 18 C 1.34423 * 110.27933 * 343.11689 * 13 12 11 19 19 H 0.97001 * 119.99760 * 0.02562 * 1 2 3 20 20 H 1.08996 * 110.95171 * 97.46247 * 11 9 7 21 21 H 1.08997 * 110.96488 * 333.76980 * 11 9 7 22 22 H 1.08994 * 110.34109 * 266.66994 * 12 11 9 23 23 H 1.08998 * 110.42036 * 144.47318 * 12 11 9 24 24 H 1.08002 * 125.65309 * 179.87546 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6297 -2.5789 0.8914 11 6 2.2348 -3.6876 -0.0773 12 6 1.4514 -4.6935 -0.9493 13 6 0.5124 -3.8442 -1.7791 14 7 -0.2651 -3.8896 -2.8755 15 6 -0.8439 -2.7329 -3.0418 16 7 -0.4583 -1.9086 -2.0447 17 1 -0.7379 -0.9885 -1.9175 18 6 0.4011 -2.6154 -1.2454 19 1 -0.4850 0.8401 -0.0004 20 1 2.4276 -4.0986 0.9136 21 1 3.1652 -3.3931 -0.5627 22 1 0.8851 -5.3799 -0.3199 23 1 2.1322 -5.2474 -1.5957 24 1 -1.5230 -2.4780 -3.8420 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261009650.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:51 Heat of formation + Delta-G solvation = 37.437400 kcal Electronic energy + Delta-G solvation = -10461.030150 eV Core-core repulsion = 8567.350306 eV Total energy + Delta-G solvation = -1893.679845 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.78245 -37.32220 -34.72118 -32.64656 -29.42075 -28.39038 -25.55202 -22.60904 -21.46457 -20.21792 -18.68378 -17.90538 -16.58417 -16.02640 -15.15409 -14.74052 -14.20585 -14.03526 -13.62656 -13.12473 -12.82174 -12.54632 -12.40604 -11.84629 -11.59964 -11.11088 -10.84223 -10.44135 -10.33452 -8.70836 -8.23005 -6.34788 1.40277 1.41361 1.48398 1.63235 2.36331 2.38956 2.65677 3.06352 3.54927 4.25890 4.39369 4.49039 4.78478 4.89222 5.04451 5.18699 5.34404 5.40982 5.63507 5.75846 5.84141 6.08388 6.22687 6.73403 7.02212 7.34036 7.42269 8.84756 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.052551 B = 0.017422 C = 0.014123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.689414 B = 1606.735494 C = 1982.035825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.524 4.524 8 H 0.062 0.938 9 C 0.097 3.903 10 H 0.018 0.982 11 C -0.098 4.098 12 C -0.018 4.018 13 C -0.108 4.108 14 N -0.516 5.516 15 C 0.145 3.855 16 N -0.536 5.536 17 H 0.421 0.579 18 C 0.019 3.981 19 H 0.265 0.735 20 H 0.090 0.910 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -1.802 -1.800 2.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.182 4.182 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.078 3.922 10 H 0.036 0.964 11 C -0.136 4.136 12 C -0.056 4.056 13 C -0.235 4.235 14 N -0.237 5.237 15 C -0.137 4.137 16 N -0.139 5.139 17 H 0.262 0.738 18 C -0.101 4.101 19 H 0.075 0.925 20 H 0.108 0.892 21 H 0.084 0.916 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 0.514 -2.390 -2.324 3.373 hybrid contribution -0.035 2.255 0.456 2.301 sum 0.479 -0.135 -1.868 1.933 Atomic orbital electron populations 1.69875 1.07010 1.27665 1.51563 1.25720 0.95811 1.02253 0.94373 0.85602 0.78430 0.78877 0.78710 1.20271 1.20826 1.19519 1.21633 0.93497 0.91416 1.49593 0.91932 1.18048 0.91294 0.94665 0.88215 0.96394 1.22388 0.97442 0.93950 0.99862 1.20316 0.94528 0.95743 0.95032 1.21993 1.06558 0.97303 0.97643 1.69467 1.12427 1.23244 1.18601 1.25533 1.05194 0.86193 0.96766 1.43049 1.34970 1.15156 1.20765 0.73773 1.22706 0.96183 0.92288 0.98934 0.92547 0.89196 0.91576 0.90437 0.90672 0.74372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.61 10.70 21.45 0.23 -48.38 14 2 C 0.02 0.85 5.32 84.65 0.45 1.30 14 3 Si 0.96 41.31 29.54 68.60 2.03 43.34 14 4 H -0.28 -11.90 7.11 99.48 0.71 -11.19 14 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 14 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 14 7 C -0.52 -27.57 8.53 25.60 0.22 -27.35 14 8 H 0.06 3.21 7.63 -2.91 -0.02 3.18 14 9 C 0.10 4.83 2.83 -11.63 -0.03 4.80 14 10 H 0.02 0.98 8.14 -2.39 -0.02 0.96 14 11 C -0.10 -3.89 6.63 31.59 0.21 -3.69 14 12 C -0.02 -0.68 6.79 30.56 0.21 -0.48 14 13 C -0.11 -5.06 7.98 41.49 0.33 -4.73 14 14 N -0.52 -23.53 11.26 -187.66 -2.11 -25.65 14 15 C 0.15 5.86 13.04 180.30 2.35 8.21 14 16 N -0.54 -24.54 5.93 -186.19 -1.10 -25.65 14 17 H 0.42 19.03 7.19 -92.71 -0.67 18.37 14 18 C 0.02 0.97 6.59 41.03 0.27 1.24 14 19 H 0.27 13.29 8.31 -92.71 -0.77 12.52 14 20 H 0.09 3.04 8.14 -2.39 -0.02 3.02 14 21 H 0.07 2.59 7.79 -2.39 -0.02 2.58 14 22 H 0.08 2.70 8.14 -2.39 -0.02 2.68 14 23 H 0.07 2.59 8.14 -2.39 -0.02 2.57 14 24 H 0.24 6.83 8.06 -2.91 -0.02 6.81 14 Total: -1.00 -61.03 208.00 3.58 -57.44 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.54 Total: 19.58 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 4.01 Total: -20.69 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -2.99 Total: -99.67 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -61.03 3.58 -57.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009650.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.879 kcal (2) G-P(sol) polarization free energy of solvation -61.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds