Wall clock time and date at job start Mon Mar 30 2020 01:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39248 * 120.00206 * 2 1 4 4 C 1.39712 * 120.78534 * 359.97438 * 3 2 1 5 5 C 1.38447 * 119.47508 * 180.02562 * 4 3 2 6 6 N 1.31531 * 121.10314 * 0.02562 * 5 4 3 7 7 C 1.33694 * 121.70245 * 359.68780 * 6 5 4 8 8 C 1.41457 * 119.79882 * 180.30448 * 7 6 5 9 9 H 1.08004 * 120.00251 * 180.26543 * 8 7 6 10 10 C 1.40018 * 120.00032 * 0.27156 * 8 7 6 11 11 N 1.30746 * 119.99876 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00045 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47083 * 59.99750 * 12 10 8 14 14 H 1.48493 * 109.47013 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46885 * 299.99764 * 12 10 8 16 16 C 1.39027 * 120.78183 * 180.02562 * 3 2 1 17 17 H 1.09004 * 109.47160 * 60.00140 * 1 2 3 18 18 H 1.08999 * 109.47556 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47256 * 300.00366 * 1 2 3 20 20 H 0.97008 * 119.99671 * 179.97438 * 2 1 3 21 21 H 1.08000 * 120.26325 * 0.02562 * 4 3 2 22 22 H 1.07998 * 119.44697 * 180.02562 * 5 4 3 23 23 H 0.96994 * 120.00265 * 180.02562 * 11 10 8 24 24 H 1.08002 * 120.55759 * 359.94863 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1612 1.2059 0.0000 4 6 1.4794 2.4253 -0.0005 5 6 2.1989 3.6081 -0.0011 6 7 3.5142 3.6033 -0.0016 7 6 4.2126 2.4633 0.0046 8 6 5.6265 2.5052 0.0103 9 1 6.1940 1.5863 0.0110 10 6 6.2904 3.7380 0.0152 11 7 5.6035 4.8504 0.0141 12 14 8.1576 3.7932 0.0235 13 1 8.6784 3.1101 -1.1878 14 1 8.6109 5.2073 0.0272 15 1 8.6677 3.1062 1.2372 16 6 3.5514 1.2248 -0.0005 17 1 -0.3634 0.5138 -0.8900 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 1.9499 -0.8401 0.0004 21 1 0.3995 2.4451 -0.0005 22 1 1.6713 4.5505 -0.0011 23 1 6.0633 5.7044 0.0171 24 1 4.1131 0.3024 -0.0001 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261012647.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:46 Heat of formation + Delta-G solvation = 10.975799 kcal Electronic energy + Delta-G solvation = -9997.088618 eV Core-core repulsion = 8102.261312 eV Total energy + Delta-G solvation = -1894.827306 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.08605 -36.85606 -35.12766 -31.86820 -30.90877 -27.85104 -26.30774 -23.46839 -22.33956 -19.43612 -17.51490 -17.22735 -16.38235 -15.92596 -15.02314 -15.01761 -14.61109 -14.03465 -13.81468 -13.18023 -12.81684 -12.67299 -12.59249 -12.06996 -11.61280 -11.44262 -10.94775 -9.53607 -9.41753 -8.35593 -8.23060 -6.49515 0.97989 1.40216 1.41751 1.54897 1.61309 2.25853 2.82357 2.91634 4.04722 4.28531 4.47290 4.67345 4.73032 4.86105 4.93553 5.08200 5.23290 5.40874 5.71145 5.72454 5.88257 6.30475 6.61521 6.84843 7.00447 7.12751 8.32337 8.52128 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.089490 B = 0.011479 C = 0.010230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.810709 B = 2438.676857 C = 2736.335597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.753 5.753 3 C 0.254 3.746 4 C -0.369 4.369 5 C 0.130 3.870 6 N -0.546 5.546 7 C 0.248 3.752 8 C -0.475 4.475 9 H 0.085 0.915 10 C 0.023 3.977 11 N -0.758 5.758 12 Si 0.989 3.011 13 H -0.259 1.259 14 H -0.267 1.267 15 H -0.259 1.259 16 C -0.370 4.370 17 H 0.044 0.956 18 H 0.100 0.900 19 H 0.044 0.956 20 H 0.401 0.599 21 H 0.122 0.878 22 H 0.138 0.862 23 H 0.278 0.722 24 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.786 -5.348 0.015 6.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.385 5.385 3 C 0.146 3.854 4 C -0.396 4.396 5 C -0.035 4.035 6 N -0.262 5.262 7 C 0.124 3.876 8 C -0.506 4.506 9 H 0.103 0.897 10 C -0.198 4.198 11 N -0.379 5.379 12 Si 0.809 3.191 13 H -0.183 1.183 14 H -0.191 1.191 15 H -0.183 1.183 16 C -0.397 4.397 17 H 0.063 0.937 18 H 0.118 0.882 19 H 0.063 0.937 20 H 0.235 0.765 21 H 0.140 0.860 22 H 0.155 0.845 23 H 0.089 0.911 24 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.510 -4.309 0.012 5.557 hybrid contribution 0.290 -0.937 0.005 0.981 sum -3.220 -5.245 0.017 6.155 Atomic orbital electron populations 1.21560 0.79063 1.03346 1.00567 1.44318 1.06366 1.04450 1.83336 1.17827 0.90687 0.87086 0.89846 1.21132 0.99367 0.92057 1.27091 1.22765 0.91357 0.97008 0.92411 1.68705 1.06501 1.29440 1.21558 1.18804 0.94449 0.87052 0.87328 1.19925 0.90770 0.94354 1.45558 0.89711 1.27034 1.05852 0.94498 0.92419 1.70255 1.39083 0.98820 1.29790 0.85182 0.75388 0.78537 0.80024 1.18314 1.19110 1.18301 1.21275 0.92761 0.98069 1.27617 0.93688 0.88191 0.93698 0.76507 0.86032 0.84507 0.91145 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.53 9.97 127.77 1.27 3.80 14 2 N -0.75 -25.93 5.88 -360.39 -2.12 -28.05 14 3 C 0.25 11.66 6.69 38.51 0.26 11.92 14 4 C -0.37 -16.95 9.40 22.68 0.21 -16.74 14 5 C 0.13 6.65 11.17 84.79 0.95 7.59 14 6 N -0.55 -32.37 7.86 -189.38 -1.49 -33.86 14 7 C 0.25 14.65 6.55 40.18 0.26 14.91 14 8 C -0.48 -27.25 9.14 23.49 0.21 -27.04 14 9 H 0.08 4.54 7.85 -2.91 -0.02 4.52 14 10 C 0.02 1.25 5.50 85.29 0.47 1.71 14 11 N -0.76 -42.79 11.46 21.84 0.25 -42.54 14 12 Si 0.99 39.54 29.56 68.60 2.03 41.57 14 13 H -0.26 -9.97 7.11 99.48 0.71 -9.26 14 14 H -0.27 -10.06 7.11 99.48 0.71 -9.35 14 15 H -0.26 -9.96 7.11 99.48 0.71 -9.25 14 16 C -0.37 -19.35 9.72 22.99 0.22 -19.13 14 17 H 0.04 1.16 7.99 -2.39 -0.02 1.14 14 18 H 0.10 1.77 8.14 -2.39 -0.02 1.75 14 19 H 0.04 1.16 7.99 -2.39 -0.02 1.14 14 20 H 0.40 12.12 8.86 -92.70 -0.82 11.30 14 21 H 0.12 4.76 6.87 -2.91 -0.02 4.74 14 22 H 0.14 6.16 8.06 -2.91 -0.02 6.13 14 23 H 0.28 14.14 8.29 -92.71 -0.77 13.37 14 24 H 0.10 4.93 8.06 -2.91 -0.02 4.91 14 Total: -1.00 -67.60 216.32 2.92 -64.69 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.38 Total: 21.15 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.86 Total: -22.96 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -3.36 Total: -104.45 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -67.60 2.92 -64.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012647.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.662 kcal (2) G-P(sol) polarization free energy of solvation -67.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds