Wall clock time and date at job start Mon Mar 30 2020 01:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31486 * 119.76518 * 2 1 4 4 C 1.32261 * 122.22067 * 179.97438 * 3 2 1 5 5 C 1.38035 * 121.45491 * 359.97438 * 4 3 2 6 6 C 1.39163 * 119.32593 * 359.77024 * 5 4 3 7 7 N 1.38412 * 121.00174 * 180.26029 * 6 5 4 8 8 C 1.40613 * 119.76420 * 179.97438 * 2 1 3 9 9 C 1.41113 * 120.73733 * 0.02562 * 8 2 1 10 10 H 1.07996 * 119.99689 * 317.62599 * 9 8 2 11 11 C 1.39929 * 119.99900 * 137.62769 * 9 8 2 12 12 N 1.30879 * 120.00142 * 336.94932 * 11 9 8 13 13 Si 1.86804 * 120.00141 * 156.94840 * 11 9 8 14 14 H 1.48499 * 109.46940 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.46857 * 299.99687 * 13 11 9 16 16 H 1.48499 * 109.47012 * 59.99546 * 13 11 9 17 17 H 1.08994 * 109.46891 * 270.01707 * 1 2 3 18 18 H 1.08993 * 109.47002 * 30.01979 * 1 2 3 19 19 H 1.09000 * 109.46800 * 150.01655 * 1 2 3 20 20 H 1.08001 * 119.27381 * 180.02562 * 4 3 2 21 21 H 1.08006 * 120.33659 * 180.02562 * 5 4 3 22 22 H 0.97003 * 119.99475 * 170.82610 * 7 6 5 23 23 H 0.96992 * 119.99946 * 350.81840 * 7 6 5 24 24 H 0.96997 * 119.99671 * 353.00884 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1598 1.1414 0.0000 4 6 3.4812 1.1981 0.0005 5 6 4.2513 0.0525 0.0016 6 6 3.6246 -1.1900 0.0070 7 7 4.3629 -2.3608 0.0137 8 6 2.2051 -1.2206 0.0005 9 6 1.5103 -2.4488 0.0006 10 1 0.6428 -2.5784 0.6306 11 6 1.9453 -3.4988 -0.8158 12 7 2.6688 -3.2463 -1.8768 13 14 1.4936 -5.2609 -0.3911 14 1 2.0725 -6.1784 -1.4052 15 1 2.0342 -5.6012 0.9495 16 1 0.0155 -5.4040 -0.3798 17 1 -0.3633 0.0003 1.0276 18 1 -0.3633 0.8898 -0.5141 19 1 -0.3633 -0.8901 -0.5136 20 1 3.9685 2.1619 0.0009 21 1 5.3293 0.1198 0.0024 22 1 3.9199 -3.2127 0.1513 23 1 5.3231 -2.3294 -0.1194 24 1 2.8185 -2.3291 -2.1546 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306640533.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:57 Heat of formation + Delta-G solvation = 12.011469 kcal Electronic energy + Delta-G solvation = -10421.999385 eV Core-core repulsion = 8527.216990 eV Total energy + Delta-G solvation = -1894.782396 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.68772 -34.84225 -33.08282 -30.88322 -28.65480 -26.63565 -24.71036 -21.28507 -20.22675 -17.86425 -16.21317 -15.54255 -14.22449 -14.05100 -13.69699 -13.22283 -12.74405 -12.23820 -11.97302 -11.38053 -11.11089 -11.00913 -10.61494 -10.42427 -10.00073 -9.49817 -9.10010 -7.99535 -7.55440 -7.11568 -6.58885 -4.32645 2.60289 3.01390 3.16621 3.23266 3.34902 4.04381 4.66132 5.14612 5.44385 5.81379 6.10459 6.46813 6.50733 6.66637 6.79420 6.90403 7.23296 7.27594 7.48580 7.83984 7.95460 8.13149 8.48821 8.80920 8.89911 9.02903 9.67783 10.19052 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.051511 B = 0.018336 C = 0.014596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.446735 B = 1526.714068 C = 1917.844334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.040 3.960 3 N -0.509 5.509 4 C 0.028 3.972 5 C -0.243 4.243 6 C 0.176 3.824 7 N -0.859 5.859 8 C 0.001 3.999 9 C -0.536 4.536 10 H 0.074 0.926 11 C 0.027 3.973 12 N -0.807 5.807 13 Si 1.058 2.942 14 H -0.276 1.276 15 H -0.278 1.278 16 H -0.277 1.277 17 H 0.047 0.953 18 H 0.048 0.952 19 H 0.068 0.932 20 H 0.121 0.879 21 H 0.099 0.901 22 H 0.400 0.600 23 H 0.378 0.622 24 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 -1.385 2.149 2.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 N -0.221 5.221 4 C -0.131 4.131 5 C -0.270 4.270 6 C 0.064 3.936 7 N -0.400 5.400 8 C -0.006 4.006 9 C -0.567 4.567 10 H 0.092 0.908 11 C -0.191 4.191 12 N -0.432 5.432 13 Si 0.883 3.117 14 H -0.201 1.201 15 H -0.204 1.204 16 H -0.202 1.202 17 H 0.066 0.934 18 H 0.067 0.933 19 H 0.087 0.913 20 H 0.139 0.861 21 H 0.117 0.883 22 H 0.232 0.768 23 H 0.204 0.796 24 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.616 -2.180 1.648 2.801 hybrid contribution 0.672 0.570 0.424 0.977 sum 1.287 -1.611 2.072 2.923 Atomic orbital electron populations 1.20239 0.91060 1.01174 1.00262 1.21050 0.95268 0.87713 1.05850 1.66866 1.09567 1.30298 1.15352 1.21479 0.89416 0.96016 1.06228 1.21028 0.98547 0.92701 1.14751 1.18299 0.91705 0.86200 0.97373 1.42092 1.08193 1.06986 1.82697 1.18063 0.89732 0.94572 0.98260 1.19989 1.14647 0.96965 1.25107 0.90815 1.26753 0.93592 1.05850 0.92902 1.70449 1.28335 1.26146 1.18283 0.83724 0.77442 0.73811 0.76749 1.20134 1.20362 1.20245 0.93430 0.93330 0.91283 0.86122 0.88310 0.76834 0.79623 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 9.68 36.01 0.35 -1.20 14 2 C 0.04 1.02 6.85 -81.84 -0.56 0.46 14 3 N -0.51 -12.87 10.25 -8.92 -0.09 -12.97 14 4 C 0.03 0.65 11.15 -17.44 -0.19 0.45 14 5 C -0.24 -5.60 9.98 -39.31 -0.39 -5.99 14 6 C 0.18 4.35 5.90 -83.11 -0.49 3.86 14 7 N -0.86 -18.87 7.84 32.83 0.26 -18.61 14 8 C 0.00 0.03 4.87 -106.48 -0.52 -0.49 14 9 C -0.54 -13.85 7.32 -37.86 -0.28 -14.13 14 10 H 0.07 1.89 7.68 -52.49 -0.40 1.49 14 11 C 0.03 0.66 3.29 -17.32 -0.06 0.61 14 12 N -0.81 -20.99 12.13 55.55 0.67 -20.31 14 13 Si 1.06 21.09 29.98 -169.99 -5.10 16.00 14 14 H -0.28 -5.53 7.11 56.52 0.40 -5.13 14 15 H -0.28 -5.29 7.11 56.52 0.40 -4.89 14 16 H -0.28 -5.36 7.11 56.52 0.40 -4.96 14 17 H 0.05 0.98 8.14 -51.93 -0.42 0.55 14 18 H 0.05 1.00 8.14 -51.93 -0.42 0.57 14 19 H 0.07 1.53 7.06 -51.93 -0.37 1.17 14 20 H 0.12 2.42 8.06 -52.49 -0.42 2.00 14 21 H 0.10 1.98 8.06 -52.48 -0.42 1.56 14 22 H 0.40 9.06 6.10 -40.82 -0.25 8.81 14 23 H 0.38 7.14 8.86 -40.82 -0.36 6.78 14 24 H 0.29 8.07 7.29 -40.82 -0.30 7.77 14 LS Contribution 209.95 15.07 3.16 3.16 Total: -1.00 -28.06 209.95 -5.40 -33.46 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -2.16 Total: 15.71 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -2.14 Total: -16.44 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.84 Total: -51.89 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.10 Total: 16.00 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -28.06 -5.40 -33.46 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306640533.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.471 kcal (2) G-P(sol) polarization free energy of solvation -28.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds