Wall clock time and date at job start Mon Mar 30 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36600 * 120.25416 * 2 1 4 4 C 1.41283 * 118.40793 * 179.74706 * 3 2 1 5 5 C 1.41200 * 120.57093 * 180.25887 * 4 3 2 6 6 H 1.07999 * 120.00268 * 203.81396 * 5 4 3 7 7 C 1.39873 * 119.99914 * 23.81509 * 5 4 3 8 8 N 1.30901 * 119.99808 * 17.47955 * 7 5 4 9 9 Si 1.86799 * 119.99823 * 197.47498 * 7 5 4 10 10 H 1.48500 * 109.47466 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47109 * 120.00293 * 9 7 5 12 12 H 1.48501 * 109.47318 * 240.00004 * 9 7 5 13 13 C 1.40788 * 118.85877 * 0.54612 * 4 3 2 14 14 N 1.31457 * 120.36666 * 359.71387 * 13 4 3 15 15 C 1.32771 * 121.73108 * 0.02562 * 14 13 4 16 16 N 1.38381 * 119.43197 * 180.02562 * 15 14 13 17 17 H 1.09005 * 109.46748 * 269.72594 * 1 2 3 18 18 H 1.08992 * 109.47274 * 149.72710 * 1 2 3 19 19 H 1.09000 * 109.47215 * 29.71904 * 1 2 3 20 20 H 1.08005 * 120.79261 * 359.97438 * 3 2 1 21 21 H 0.96999 * 119.99367 * 179.97438 * 8 7 5 22 22 H 1.08001 * 119.81874 * 179.73362 * 13 4 3 23 23 H 0.97002 * 119.99644 * 180.02562 * 16 15 14 24 24 H 0.96998 * 120.00040 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.1799 0.0000 4 6 3.6074 1.1344 0.0055 5 6 4.3643 2.3264 0.0112 6 1 5.3776 2.3245 -0.3624 7 6 3.8018 3.5097 0.5008 8 7 2.7330 3.4631 1.2552 9 14 4.5758 5.1565 0.0783 10 1 5.7656 4.9378 -0.7829 11 1 3.5884 5.9961 -0.6464 12 1 4.9883 5.8448 1.3278 13 6 4.2469 -0.1198 -0.0010 14 7 3.5383 -1.2270 -0.0064 15 6 2.2107 -1.2065 -0.0063 16 7 1.5121 -2.4010 -0.0116 17 1 -0.3633 -0.0049 1.0277 18 1 -0.3633 -0.8875 -0.5180 19 1 -0.3633 0.8925 -0.5095 20 1 1.6725 2.1250 -0.0004 21 1 2.3431 4.2837 1.5950 22 1 5.3256 -0.1727 -0.0013 23 1 0.5421 -2.3955 -0.0120 24 1 1.9924 -3.2437 -0.0148 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306708552.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:26 Heat of formation + Delta-G solvation = 18.840928 kcal Electronic energy + Delta-G solvation = -10125.745015 eV Core-core repulsion = 8231.258767 eV Total energy + Delta-G solvation = -1894.486248 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.56779 -34.47199 -32.91432 -31.82064 -29.14602 -26.07254 -24.68085 -21.42621 -20.30279 -17.01547 -16.31336 -16.02887 -14.92785 -13.59364 -13.43999 -13.22899 -12.57205 -12.03959 -11.80821 -11.50426 -11.44604 -11.13135 -11.02108 -10.51422 -9.70456 -9.58119 -8.91673 -8.06118 -7.92985 -6.80784 -6.56093 -4.15027 2.76062 2.98550 3.11280 3.16883 3.33457 3.98872 4.72676 4.83052 5.72287 5.97006 6.00122 6.34486 6.43457 6.45832 6.84584 7.00801 7.21774 7.37747 7.57442 7.88984 7.96810 8.45296 8.54917 8.68334 8.89500 8.95568 9.79958 10.27156 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.070637 B = 0.013252 C = 0.011504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.298145 B = 2112.419977 C = 2433.264081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.180 4.180 3 C -0.091 4.091 4 C 0.028 3.972 5 C -0.457 4.457 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.807 5.807 9 Si 0.907 3.093 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.276 1.276 13 C 0.008 3.992 14 N -0.525 5.525 15 C 0.282 3.718 16 N -0.877 5.877 17 H 0.052 0.948 18 H 0.046 0.954 19 H 0.054 0.946 20 H 0.128 0.872 21 H 0.278 0.722 22 H 0.126 0.874 23 H 0.390 0.610 24 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 -1.538 -1.568 3.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.186 4.186 3 C -0.117 4.117 4 C 0.023 3.977 5 C -0.489 4.489 6 H 0.096 0.904 7 C -0.142 4.142 8 N -0.434 5.434 9 Si 0.732 3.268 10 H -0.185 1.185 11 H -0.199 1.199 12 H -0.202 1.202 13 C -0.150 4.150 14 N -0.240 5.240 15 C 0.048 3.952 16 N -0.426 5.426 17 H 0.071 0.929 18 H 0.065 0.935 19 H 0.073 0.927 20 H 0.146 0.854 21 H 0.088 0.912 22 H 0.144 0.856 23 H 0.219 0.781 24 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.860 -2.065 -1.436 3.809 hybrid contribution -0.299 1.357 -0.025 1.390 sum -3.159 -0.708 -1.461 3.552 Atomic orbital electron populations 1.20447 0.93237 1.00573 1.00508 1.19629 0.94937 0.93333 1.10673 1.21218 0.94278 0.96222 1.00019 1.18359 0.92532 0.93503 0.93286 1.19341 1.00365 0.92313 1.36837 0.90406 1.25846 0.94569 1.01154 0.92646 1.69836 1.19480 1.29912 1.24133 0.86288 0.80099 0.81333 0.79125 1.18473 1.19905 1.20157 1.22194 0.97445 0.87119 1.08261 1.66572 1.05634 1.33330 1.18466 1.17650 0.88221 0.85399 1.03979 1.41621 1.07239 1.04804 1.88906 0.92890 0.93501 0.92677 0.85387 0.91152 0.85610 0.78105 0.78869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.56 36.01 0.34 -1.32 14 2 C -0.18 -4.23 5.88 -104.68 -0.62 -4.85 14 3 C -0.09 -2.38 8.39 -39.02 -0.33 -2.71 14 4 C 0.03 0.77 5.59 -106.65 -0.60 0.18 14 5 C -0.46 -12.24 9.07 -37.85 -0.34 -12.59 14 6 H 0.08 2.00 7.90 -52.49 -0.41 1.58 14 7 C 0.07 1.86 5.17 -17.34 -0.09 1.77 14 8 N -0.81 -21.05 10.92 55.54 0.61 -20.44 14 9 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 14 10 H -0.26 -5.38 7.11 56.52 0.40 -4.98 14 11 H -0.27 -5.60 7.11 56.52 0.40 -5.20 14 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 14 13 C 0.01 0.20 10.97 -16.75 -0.18 0.02 14 14 N -0.52 -13.30 10.37 -11.78 -0.12 -13.43 14 15 C 0.28 6.63 7.72 -155.11 -1.20 5.43 14 16 N -0.88 -16.10 8.95 31.17 0.28 -15.82 14 17 H 0.05 0.93 8.14 -51.93 -0.42 0.51 14 18 H 0.05 0.74 6.53 -51.93 -0.34 0.40 14 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 14 20 H 0.13 3.42 6.20 -52.48 -0.33 3.10 14 21 H 0.28 6.59 8.30 -40.82 -0.34 6.25 14 22 H 0.13 3.04 8.06 -52.49 -0.42 2.62 14 23 H 0.39 6.05 6.75 -40.82 -0.28 5.78 14 24 H 0.38 6.46 8.95 -40.82 -0.37 6.09 14 LS Contribution 212.44 15.07 3.20 3.20 Total: -1.00 -29.08 212.44 -6.19 -35.28 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -2.12 Total: 11.44 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -3.01 Total: -14.07 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.76 Total: -49.69 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -29.08 -6.19 -35.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306708552.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.120 kcal (2) G-P(sol) polarization free energy of solvation -29.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds