Wall clock time and date at job start Mon Mar 30 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36600 * 120.25416 * 2 1 4 4 C 1.41283 * 118.40793 * 179.74706 * 3 2 1 5 5 C 1.41200 * 120.57093 * 180.25887 * 4 3 2 6 6 H 1.07999 * 120.00268 * 203.81396 * 5 4 3 7 7 C 1.39873 * 119.99914 * 23.81509 * 5 4 3 8 8 N 1.30901 * 119.99808 * 17.47955 * 7 5 4 9 9 Si 1.86799 * 119.99823 * 197.47498 * 7 5 4 10 10 H 1.48500 * 109.47466 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47109 * 120.00293 * 9 7 5 12 12 H 1.48501 * 109.47318 * 240.00004 * 9 7 5 13 13 C 1.40788 * 118.85877 * 0.54612 * 4 3 2 14 14 N 1.31457 * 120.36666 * 359.71387 * 13 4 3 15 15 C 1.32771 * 121.73108 * 0.02562 * 14 13 4 16 16 N 1.38381 * 119.43197 * 180.02562 * 15 14 13 17 17 H 1.09005 * 109.46748 * 269.72594 * 1 2 3 18 18 H 1.08992 * 109.47274 * 149.72710 * 1 2 3 19 19 H 1.09000 * 109.47215 * 29.71904 * 1 2 3 20 20 H 1.08005 * 120.79261 * 359.97438 * 3 2 1 21 21 H 0.96999 * 119.99367 * 179.97438 * 8 7 5 22 22 H 1.08001 * 119.81874 * 179.73362 * 13 4 3 23 23 H 0.97002 * 119.99644 * 180.02562 * 16 15 14 24 24 H 0.96998 * 120.00040 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.1799 0.0000 4 6 3.6074 1.1344 0.0055 5 6 4.3643 2.3264 0.0112 6 1 5.3776 2.3245 -0.3624 7 6 3.8018 3.5097 0.5008 8 7 2.7330 3.4631 1.2552 9 14 4.5758 5.1565 0.0783 10 1 5.7656 4.9378 -0.7829 11 1 3.5884 5.9961 -0.6464 12 1 4.9883 5.8448 1.3278 13 6 4.2469 -0.1198 -0.0010 14 7 3.5383 -1.2270 -0.0064 15 6 2.2107 -1.2065 -0.0063 16 7 1.5121 -2.4010 -0.0116 17 1 -0.3633 -0.0049 1.0277 18 1 -0.3633 -0.8875 -0.5180 19 1 -0.3633 0.8925 -0.5095 20 1 1.6725 2.1250 -0.0004 21 1 2.3431 4.2837 1.5950 22 1 5.3256 -0.1727 -0.0013 23 1 0.5421 -2.3955 -0.0120 24 1 1.9924 -3.2437 -0.0148 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306708552.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:26 Heat of formation + Delta-G solvation = -0.226866 kcal Electronic energy + Delta-G solvation = -10126.571856 eV Core-core repulsion = 8231.258767 eV Total energy + Delta-G solvation = -1895.313090 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.44652 -36.32530 -34.73715 -33.60674 -31.01096 -27.79805 -26.59590 -23.32257 -22.17255 -18.95905 -18.03222 -17.83987 -16.71814 -15.39433 -15.19665 -14.97945 -14.35406 -13.77972 -13.43966 -13.38281 -13.11004 -12.99806 -12.70646 -12.18482 -11.56384 -11.39786 -10.74668 -9.99314 -9.85547 -8.68801 -8.40403 -6.13069 0.87231 1.13043 1.41596 1.55133 1.57659 2.25209 2.81332 3.21418 3.77727 4.24254 4.46358 4.62834 4.78130 4.91100 4.98912 5.24283 5.33008 5.45766 5.73522 5.96295 6.04144 6.52693 6.81308 6.87834 7.01150 7.15189 7.94731 8.40089 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.070637 B = 0.013252 C = 0.011504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.298145 B = 2112.419977 C = 2433.264081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.186 4.186 3 C -0.110 4.110 4 C -0.003 4.003 5 C -0.492 4.492 6 H 0.076 0.924 7 C 0.034 3.966 8 N -0.837 5.837 9 Si 0.982 3.018 10 H -0.259 1.259 11 H -0.265 1.265 12 H -0.268 1.268 13 C -0.013 4.013 14 N -0.539 5.539 15 C 0.281 3.719 16 N -0.856 5.856 17 H 0.065 0.935 18 H 0.078 0.922 19 H 0.059 0.941 20 H 0.117 0.883 21 H 0.286 0.714 22 H 0.132 0.868 23 H 0.407 0.593 24 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -1.567 -1.766 4.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.192 4.192 3 C -0.137 4.137 4 C -0.008 4.008 5 C -0.523 4.523 6 H 0.094 0.906 7 C -0.179 4.179 8 N -0.464 5.464 9 Si 0.804 3.196 10 H -0.183 1.183 11 H -0.190 1.190 12 H -0.193 1.193 13 C -0.170 4.170 14 N -0.256 5.256 15 C 0.044 3.956 16 N -0.407 5.407 17 H 0.083 0.917 18 H 0.097 0.903 19 H 0.078 0.922 20 H 0.135 0.865 21 H 0.097 0.903 22 H 0.149 0.851 23 H 0.239 0.761 24 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.840 -2.135 -1.632 4.687 hybrid contribution -0.087 1.233 0.054 1.237 sum -3.927 -0.902 -1.578 4.327 Atomic orbital electron populations 1.20494 0.89544 1.02469 1.01843 1.20106 0.97735 0.92443 1.08881 1.21271 0.94194 0.96924 1.01307 1.18694 0.93489 0.94228 0.94377 1.19578 1.00759 0.93478 1.38529 0.90603 1.26682 0.94990 1.04444 0.91801 1.69879 1.20607 1.31372 1.24545 0.85153 0.79183 0.76298 0.79010 1.18293 1.18962 1.19296 1.22317 0.98014 0.87275 1.09384 1.66610 1.06680 1.32964 1.19347 1.18044 0.88022 0.87132 1.02375 1.41498 1.08078 1.03614 1.87487 0.91668 0.90313 0.92150 0.86516 0.90318 0.85052 0.76094 0.77587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.95 9.56 71.24 0.68 -2.27 14 2 C -0.19 -8.53 5.88 -19.90 -0.12 -8.64 14 3 C -0.11 -5.84 8.39 22.64 0.19 -5.65 14 4 C 0.00 -0.15 5.59 -21.18 -0.12 -0.27 14 5 C -0.49 -27.04 9.07 23.39 0.21 -26.83 14 6 H 0.08 4.02 7.90 -2.91 -0.02 3.99 14 7 C 0.03 1.73 5.17 85.23 0.44 2.17 14 8 N -0.84 -44.02 10.92 21.82 0.24 -43.78 14 9 Si 0.98 38.67 29.59 68.60 2.03 40.70 14 10 H -0.26 -10.02 7.11 99.48 0.71 -9.32 14 11 H -0.26 -9.97 7.11 99.48 0.71 -9.27 14 12 H -0.27 -10.13 7.11 99.48 0.71 -9.43 14 13 C -0.01 -0.71 10.97 85.37 0.94 0.22 14 14 N -0.54 -27.20 10.37 -191.20 -1.98 -29.19 14 15 C 0.28 12.79 7.72 133.29 1.03 13.81 14 16 N -0.86 -28.86 8.95 -55.28 -0.49 -29.36 14 17 H 0.06 2.10 8.14 -2.38 -0.02 2.08 14 18 H 0.08 2.17 6.53 -2.39 -0.02 2.15 14 19 H 0.06 2.01 8.08 -2.39 -0.02 1.99 14 20 H 0.12 6.36 6.20 -2.91 -0.02 6.34 14 21 H 0.29 13.57 8.30 -92.71 -0.77 12.80 14 22 H 0.13 6.57 8.06 -2.91 -0.02 6.54 14 23 H 0.41 11.01 6.75 -92.71 -0.63 10.38 14 24 H 0.40 12.10 8.95 -92.71 -0.83 11.27 14 Total: -1.00 -62.37 212.44 2.82 -59.55 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: -0.22 Total: 29.55 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.26 Total: -27.46 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -2.24 Total: -102.33 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -62.37 2.82 -59.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306708552.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.320 kcal (2) G-P(sol) polarization free energy of solvation -62.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds