Wall clock time and date at job start Mon Mar 30 2020 01:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31498 * 119.71770 * 2 1 4 4 C 1.31993 * 122.05436 * 180.28935 * 3 2 1 5 5 C 1.39339 * 121.20671 * 359.47250 * 4 3 2 6 6 N 1.39718 * 120.36215 * 180.27622 * 5 4 3 7 7 C 1.38655 * 119.27443 * 0.25472 * 5 4 3 8 8 C 1.40764 * 119.71750 * 179.76452 * 2 1 3 9 9 C 1.41424 * 120.61953 * 0.02562 * 8 2 1 10 10 H 1.08002 * 120.00007 * 334.91064 * 9 8 2 11 11 C 1.39933 * 119.99897 * 154.91636 * 9 8 2 12 12 N 1.30826 * 120.00157 * 344.13688 * 11 9 8 13 13 Si 1.86807 * 120.00122 * 164.14620 * 11 9 8 14 14 H 1.48502 * 109.47021 * 94.74762 * 13 11 9 15 15 H 1.48494 * 109.47087 * 214.75036 * 13 11 9 16 16 H 1.48498 * 109.47017 * 334.74698 * 13 11 9 17 17 H 1.09002 * 109.47515 * 270.23827 * 1 2 3 18 18 H 1.09008 * 109.46931 * 30.23568 * 1 2 3 19 19 H 1.08998 * 109.47482 * 150.23177 * 1 2 3 20 20 H 1.07997 * 119.39279 * 179.74882 * 4 3 2 21 21 H 0.97001 * 120.00087 * 359.97438 * 6 5 4 22 22 H 0.96992 * 120.00103 * 179.97438 * 6 5 4 23 23 H 1.08002 * 120.92880 * 179.97438 * 7 5 4 24 24 H 0.97007 * 120.00396 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1420 0.0000 4 6 3.4776 1.1959 -0.0056 5 6 4.2476 0.0345 -0.0010 6 7 5.6426 0.1121 -0.0013 7 6 3.6142 -1.1989 0.0045 8 6 2.2047 -1.2225 0.0050 9 6 1.5048 -2.4514 0.0095 10 1 0.5014 -2.4999 0.4059 11 6 2.1125 -3.6045 -0.4995 12 7 3.1787 -3.5047 -1.2511 13 14 1.4013 -5.2865 -0.1061 14 1 0.4891 -5.7064 -1.2000 15 1 2.5043 -6.2721 0.0245 16 1 0.6452 -5.2180 1.1702 17 1 -0.3634 0.0043 1.0276 18 1 -0.3633 0.8879 -0.5175 19 1 -0.3634 -0.8920 -0.5102 20 1 3.9689 2.1576 -0.0095 21 1 6.0803 0.9778 -0.0051 22 1 6.1735 -0.6996 0.0024 23 1 4.1848 -2.1159 0.0078 24 1 3.6002 -4.3041 -1.6037 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306900299.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:58 Heat of formation + Delta-G solvation = 12.162493 kcal Electronic energy + Delta-G solvation = -10171.969841 eV Core-core repulsion = 8277.193994 eV Total energy + Delta-G solvation = -1894.775847 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.37572 -34.30564 -33.74804 -30.56429 -29.31460 -26.04520 -24.75242 -21.58168 -20.05884 -17.38575 -16.13314 -15.35741 -14.64394 -14.38367 -13.57613 -12.99492 -12.76270 -11.67035 -11.50996 -11.46295 -11.35135 -10.96520 -10.72957 -10.52728 -9.80707 -9.68456 -9.30041 -8.01398 -7.69515 -6.81195 -6.31759 -4.42832 2.76578 3.04971 3.09611 3.15038 3.27388 3.90076 4.67966 4.91064 5.72611 6.04759 6.52933 6.54212 6.74570 6.80272 6.87489 7.06800 7.23814 7.28994 7.69853 7.84954 8.01616 8.26564 8.60438 8.76486 8.79988 8.91729 9.81421 10.14481 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.045533 B = 0.016670 C = 0.012618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.796301 B = 1679.241082 C = 2218.556965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.030 4.030 3 N -0.443 5.443 4 C -0.096 4.096 5 C 0.169 3.831 6 N -0.888 5.888 7 C -0.212 4.212 8 C 0.101 3.899 9 C -0.448 4.448 10 H 0.084 0.916 11 C 0.075 3.925 12 N -0.790 5.790 13 Si 0.909 3.091 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.259 1.259 17 H 0.043 0.957 18 H 0.045 0.955 19 H 0.064 0.936 20 H 0.114 0.886 21 H 0.384 0.616 22 H 0.387 0.613 23 H 0.125 0.875 24 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 -0.686 1.358 1.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.175 4.175 3 N -0.151 5.151 4 C -0.256 4.256 5 C 0.066 3.934 6 N -0.429 5.429 7 C -0.243 4.243 8 C 0.096 3.904 9 C -0.478 4.478 10 H 0.102 0.898 11 C -0.143 4.143 12 N -0.415 5.415 13 Si 0.733 3.267 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.183 1.183 17 H 0.062 0.938 18 H 0.064 0.936 19 H 0.083 0.917 20 H 0.131 0.869 21 H 0.210 0.790 22 H 0.214 0.786 23 H 0.143 0.857 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.916 -0.037 1.217 1.524 hybrid contribution 0.843 -1.596 0.035 1.805 sum 1.759 -1.633 1.252 2.707 Atomic orbital electron populations 1.20177 0.91473 1.00803 0.99903 1.20902 0.95044 0.88267 1.13265 1.66624 1.08967 1.30367 1.09120 1.21146 0.89403 0.94639 1.20401 1.18702 0.83503 0.95560 0.95638 1.42217 1.03839 1.09004 1.87871 1.21084 0.94786 0.94580 1.13829 1.18088 0.91653 0.92943 0.87761 1.19576 1.01446 0.91902 1.34924 0.89752 1.25969 0.94258 1.01524 0.92572 1.69840 1.17569 1.31460 1.22624 0.86291 0.79480 0.80796 0.80142 1.19482 1.20121 1.18304 0.93846 0.93631 0.91743 0.86875 0.79021 0.78608 0.85742 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.57 36.00 0.34 -1.12 14 2 C -0.03 -0.78 6.85 -81.78 -0.56 -1.34 14 3 N -0.44 -11.53 10.24 -8.62 -0.09 -11.62 14 4 C -0.10 -2.35 11.05 -17.07 -0.19 -2.54 14 5 C 0.17 4.04 6.77 -83.70 -0.57 3.47 14 6 N -0.89 -16.54 9.10 32.45 0.30 -16.25 14 7 C -0.21 -5.60 8.66 -38.39 -0.33 -5.94 14 8 C 0.10 2.75 5.58 -106.70 -0.60 2.15 14 9 C -0.45 -11.75 8.16 -37.74 -0.31 -12.05 14 10 H 0.08 2.09 6.85 -52.49 -0.36 1.73 14 11 C 0.07 1.86 5.20 -17.35 -0.09 1.77 14 12 N -0.79 -20.19 10.92 55.55 0.61 -19.58 14 13 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 14 14 H -0.27 -5.36 7.11 56.52 0.40 -4.96 14 15 H -0.28 -5.46 7.11 56.52 0.40 -5.06 14 16 H -0.26 -5.18 7.11 56.52 0.40 -4.78 14 17 H 0.04 0.89 8.14 -51.93 -0.42 0.46 14 18 H 0.04 0.94 8.14 -51.92 -0.42 0.51 14 19 H 0.06 1.39 6.75 -51.93 -0.35 1.04 14 20 H 0.11 2.44 8.06 -52.49 -0.42 2.02 14 21 H 0.38 5.98 8.85 -40.82 -0.36 5.62 14 22 H 0.39 6.63 8.85 -40.82 -0.36 6.27 14 23 H 0.12 3.33 6.24 -52.49 -0.33 3.00 14 24 H 0.28 6.49 8.30 -40.82 -0.34 6.15 14 LS Contribution 213.20 15.07 3.21 3.21 Total: -1.00 -29.06 213.20 -5.46 -34.52 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -2.16 Total: 12.00 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.30 Total: -15.59 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.81 Total: -47.44 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -29.06 -5.46 -34.52 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306900299.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.686 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds