Wall clock time and date at job start Mon Mar 30 2020 01:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31498 * 119.71770 * 2 1 4 4 C 1.31993 * 122.05436 * 180.28935 * 3 2 1 5 5 C 1.39339 * 121.20671 * 359.47250 * 4 3 2 6 6 N 1.39718 * 120.36215 * 180.27622 * 5 4 3 7 7 C 1.38655 * 119.27443 * 0.25472 * 5 4 3 8 8 C 1.40764 * 119.71750 * 179.76452 * 2 1 3 9 9 C 1.41424 * 120.61953 * 0.02562 * 8 2 1 10 10 H 1.08002 * 120.00007 * 334.91064 * 9 8 2 11 11 C 1.39933 * 119.99897 * 154.91636 * 9 8 2 12 12 N 1.30826 * 120.00157 * 344.13688 * 11 9 8 13 13 Si 1.86807 * 120.00122 * 164.14620 * 11 9 8 14 14 H 1.48502 * 109.47021 * 94.74762 * 13 11 9 15 15 H 1.48494 * 109.47087 * 214.75036 * 13 11 9 16 16 H 1.48498 * 109.47017 * 334.74698 * 13 11 9 17 17 H 1.09002 * 109.47515 * 270.23827 * 1 2 3 18 18 H 1.09008 * 109.46931 * 30.23568 * 1 2 3 19 19 H 1.08998 * 109.47482 * 150.23177 * 1 2 3 20 20 H 1.07997 * 119.39279 * 179.74882 * 4 3 2 21 21 H 0.97001 * 120.00087 * 359.97438 * 6 5 4 22 22 H 0.96992 * 120.00103 * 179.97438 * 6 5 4 23 23 H 1.08002 * 120.92880 * 179.97438 * 7 5 4 24 24 H 0.97007 * 120.00396 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1420 0.0000 4 6 3.4776 1.1959 -0.0056 5 6 4.2476 0.0345 -0.0010 6 7 5.6426 0.1121 -0.0013 7 6 3.6142 -1.1989 0.0045 8 6 2.2047 -1.2225 0.0050 9 6 1.5048 -2.4514 0.0095 10 1 0.5014 -2.4999 0.4059 11 6 2.1125 -3.6045 -0.4995 12 7 3.1787 -3.5047 -1.2511 13 14 1.4013 -5.2865 -0.1061 14 1 0.4891 -5.7064 -1.2000 15 1 2.5043 -6.2721 0.0245 16 1 0.6452 -5.2180 1.1702 17 1 -0.3634 0.0043 1.0276 18 1 -0.3633 0.8879 -0.5175 19 1 -0.3634 -0.8920 -0.5102 20 1 3.9689 2.1576 -0.0095 21 1 6.0803 0.9778 -0.0051 22 1 6.1735 -0.6996 0.0024 23 1 4.1848 -2.1159 0.0078 24 1 3.6002 -4.3041 -1.6037 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306900299.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:58 Heat of formation + Delta-G solvation = -7.821803 kcal Electronic energy + Delta-G solvation = -10172.836425 eV Core-core repulsion = 8277.193994 eV Total energy + Delta-G solvation = -1895.642431 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.27025 -36.12022 -35.59075 -32.46739 -31.11746 -27.93499 -26.59692 -23.50899 -21.93907 -19.26787 -17.90923 -17.17158 -16.40705 -16.17995 -15.36149 -14.85565 -14.53242 -13.50939 -13.31764 -13.23114 -13.15988 -12.68258 -12.53440 -12.14966 -11.66480 -11.46153 -11.13997 -9.96636 -9.65921 -8.66780 -8.10199 -6.39508 0.95148 1.22323 1.41668 1.52975 1.58837 2.21897 2.79576 3.31023 3.78030 4.23067 4.66729 4.71703 4.91505 5.04479 5.07446 5.22999 5.35074 5.49119 5.79362 6.00173 6.06333 6.42880 6.75367 6.87206 7.00159 7.27456 7.86806 8.31397 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.045533 B = 0.016670 C = 0.012618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.796301 B = 1679.241082 C = 2218.556965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.059 4.059 3 N -0.455 5.455 4 C -0.111 4.111 5 C 0.176 3.824 6 N -0.868 5.868 7 C -0.242 4.242 8 C 0.072 3.928 9 C -0.475 4.475 10 H 0.089 0.911 11 C 0.035 3.965 12 N -0.819 5.819 13 Si 0.985 3.015 14 H -0.262 1.262 15 H -0.268 1.268 16 H -0.256 1.256 17 H 0.056 0.944 18 H 0.056 0.944 19 H 0.064 0.936 20 H 0.142 0.858 21 H 0.402 0.598 22 H 0.397 0.603 23 H 0.114 0.886 24 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -1.199 1.537 2.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.204 4.204 3 N -0.163 5.163 4 C -0.271 4.271 5 C 0.070 3.930 6 N -0.410 5.410 7 C -0.273 4.273 8 C 0.067 3.933 9 C -0.504 4.504 10 H 0.107 0.893 11 C -0.181 4.181 12 N -0.444 5.444 13 Si 0.806 3.194 14 H -0.187 1.187 15 H -0.193 1.193 16 H -0.180 1.180 17 H 0.075 0.925 18 H 0.075 0.925 19 H 0.083 0.917 20 H 0.159 0.841 21 H 0.231 0.769 22 H 0.225 0.775 23 H 0.131 0.869 24 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.051 -0.522 1.394 1.822 hybrid contribution 0.912 -1.369 -0.044 1.646 sum 1.963 -1.891 1.350 3.042 Atomic orbital electron populations 1.20154 0.89313 1.01294 1.00904 1.21422 0.96839 0.88124 1.14014 1.66670 1.09867 1.30424 1.09369 1.21653 0.89330 0.95972 1.20141 1.18730 0.85551 0.94635 0.94088 1.42080 1.01973 1.10645 1.86348 1.21109 0.94951 0.95152 1.16114 1.18497 0.92479 0.93971 0.88373 1.19858 1.02044 0.92636 1.35901 0.89273 1.26853 0.94434 1.05125 0.91703 1.69891 1.18565 1.33033 1.22890 0.85143 0.78833 0.75497 0.79975 1.18654 1.19266 1.17978 0.92514 0.92517 0.91746 0.84113 0.76900 0.77519 0.86855 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.59 9.57 71.23 0.68 -1.91 14 2 C -0.06 -3.11 6.85 43.22 0.30 -2.81 14 3 N -0.45 -23.49 10.24 -181.19 -1.86 -25.35 14 4 C -0.11 -5.29 11.05 84.93 0.94 -4.36 14 5 C 0.18 8.25 6.77 38.25 0.26 8.51 14 6 N -0.87 -30.75 9.10 -51.23 -0.47 -31.21 14 7 C -0.24 -12.90 8.66 23.04 0.20 -12.70 14 8 C 0.07 3.97 5.58 -21.21 -0.12 3.85 14 9 C -0.47 -25.03 8.16 23.47 0.19 -24.83 14 10 H 0.09 4.44 6.85 -2.91 -0.02 4.42 14 11 C 0.03 1.70 5.20 85.25 0.44 2.15 14 12 N -0.82 -41.85 10.92 21.82 0.24 -41.61 14 13 Si 0.99 36.92 29.59 68.60 2.03 38.95 14 14 H -0.26 -9.44 7.11 99.48 0.71 -8.74 14 15 H -0.27 -9.61 7.11 99.48 0.71 -8.91 14 16 H -0.26 -9.39 7.11 99.48 0.71 -8.69 14 17 H 0.06 2.28 8.14 -2.39 -0.02 2.26 14 18 H 0.06 2.29 8.14 -2.38 -0.02 2.27 14 19 H 0.06 2.76 6.75 -2.39 -0.02 2.75 14 20 H 0.14 5.76 8.06 -2.91 -0.02 5.74 14 21 H 0.40 11.47 8.85 -92.71 -0.82 10.65 14 22 H 0.40 12.91 8.85 -92.71 -0.82 12.09 14 23 H 0.11 6.17 6.24 -2.91 -0.02 6.15 14 24 H 0.29 13.26 8.30 -92.70 -0.77 12.49 14 Total: -1.00 -61.29 213.20 2.43 -58.86 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.41 Total: 32.47 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 2.89 Total: -32.11 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -2.08 Total: -98.17 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -61.29 2.43 -58.86 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306900299.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.041 kcal (2) G-P(sol) polarization free energy of solvation -61.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds