Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38641 * 120.25260 * 2 1 4 4 C 1.38348 * 118.68223 * 179.75014 * 3 2 1 5 5 C 1.40586 * 119.14304 * 0.51313 * 4 3 2 6 6 C 1.41318 * 119.78406 * 179.75437 * 5 4 3 7 7 H 1.07998 * 119.99669 * 6.20928 * 6 5 4 8 8 C 1.40025 * 120.00189 * 186.20844 * 6 5 4 9 9 N 1.30745 * 119.99963 * 176.75863 * 8 6 5 10 10 Si 1.86801 * 119.99962 * 356.76504 * 8 6 5 11 11 H 1.48496 * 109.47212 * 180.02562 * 10 8 6 12 12 H 1.48505 * 109.46886 * 299.99785 * 10 8 6 13 13 H 1.48501 * 109.47033 * 59.99621 * 10 8 6 14 14 N 1.33697 * 120.43574 * 359.47858 * 5 4 3 15 15 C 1.31989 * 121.41377 * 0.27227 * 14 5 4 16 16 N 1.38823 * 119.58165 * 179.97438 * 15 14 5 17 17 H 1.08993 * 109.47018 * 269.97405 * 1 2 3 18 18 H 1.09004 * 109.47101 * 29.97550 * 1 2 3 19 19 H 1.09001 * 109.46875 * 149.97478 * 1 2 3 20 20 H 1.08004 * 120.65949 * 0.02562 * 3 2 1 21 21 H 1.07996 * 120.42836 * 180.29329 * 4 3 2 22 22 H 0.96999 * 120.00085 * 355.07531 * 9 8 6 23 23 H 0.96995 * 120.00464 * 0.02562 * 16 15 14 24 24 H 0.97001 * 119.99175 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2055 1.1976 0.0000 4 6 3.5885 1.1597 0.0053 5 6 4.2393 -0.0865 -0.0005 6 6 5.6514 -0.1410 -0.0005 7 1 6.2267 0.7669 0.1051 8 6 6.3046 -1.3719 -0.1374 9 7 7.6097 -1.4159 -0.2010 10 14 5.3112 -2.9513 -0.2292 11 1 6.2319 -4.1076 -0.3712 12 1 4.5112 -3.1057 1.0124 13 1 4.4007 -2.8959 -1.4010 14 7 3.5310 -1.2204 -0.0005 15 6 2.2112 -1.2072 -0.0005 16 7 1.5137 -2.4075 -0.0010 17 1 -0.3633 -0.0005 1.0276 18 1 -0.3633 0.8902 -0.5135 19 1 -0.3633 -0.8898 -0.5142 20 1 1.6805 2.1414 0.0004 21 1 4.1607 2.0756 0.0102 22 1 8.1221 -0.5927 -0.2255 23 1 1.9963 -3.2489 -0.0011 24 1 0.5437 -2.4047 -0.0014 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307016436.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = 7.250839 kcal Electronic energy + Delta-G solvation = -10259.754606 eV Core-core repulsion = 8364.765774 eV Total energy + Delta-G solvation = -1894.988832 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.81218 -34.60476 -33.09396 -32.10359 -28.86407 -27.73689 -23.60551 -21.88060 -20.28337 -18.46500 -16.38003 -15.97947 -14.26687 -14.23179 -13.54259 -13.42888 -12.84858 -12.20452 -12.13466 -11.76140 -11.65744 -10.74326 -10.51735 -10.20618 -9.82402 -9.53180 -9.02929 -8.33466 -7.66698 -7.18954 -6.86979 -4.71549 2.65998 2.87590 3.62696 3.72955 4.03963 4.47197 4.52783 4.69742 5.59346 5.76160 5.90599 6.17980 6.22667 6.34293 6.45977 6.73064 6.85784 7.35922 7.47597 7.53552 7.69156 7.96751 8.09870 8.38639 8.50546 8.75815 9.64239 10.05126 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.056419 B = 0.018302 C = 0.013935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.165019 B = 1529.484878 C = 2008.869835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.344 4.344 3 C -0.012 4.012 4 C -0.305 4.305 5 C 0.284 3.716 6 C -0.474 4.474 7 H 0.082 0.918 8 C 0.043 3.957 9 N -0.808 5.808 10 Si 1.165 2.835 11 H -0.338 1.338 12 H -0.290 1.290 13 H -0.292 1.292 14 N -0.621 5.621 15 C 0.447 3.553 16 N -0.867 5.867 17 H 0.040 0.960 18 H 0.046 0.954 19 H 0.041 0.959 20 H 0.100 0.900 21 H 0.101 0.899 22 H 0.282 0.718 23 H 0.392 0.608 24 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 -0.458 0.022 9.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.352 4.352 3 C -0.036 4.036 4 C -0.328 4.328 5 C 0.161 3.839 6 C -0.506 4.506 7 H 0.100 0.900 8 C -0.178 4.178 9 N -0.429 5.429 10 Si 1.002 2.998 11 H -0.273 1.273 12 H -0.218 1.218 13 H -0.220 1.220 14 N -0.350 5.350 15 C 0.207 3.793 16 N -0.413 5.413 17 H 0.058 0.942 18 H 0.065 0.935 19 H 0.060 0.940 20 H 0.119 0.881 21 H 0.119 0.881 22 H 0.093 0.907 23 H 0.220 0.780 24 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.426 -2.630 -0.053 8.827 hybrid contribution -0.613 2.465 0.114 2.543 sum -9.039 -0.165 0.061 9.040 Atomic orbital electron populations 1.20141 0.92942 1.00092 0.99472 1.19241 0.94669 0.92281 1.28977 1.20605 0.93782 0.95583 0.93593 1.21382 0.93796 0.97614 1.20003 1.18271 0.93215 0.86329 0.86124 1.20764 0.90424 0.96750 1.42708 0.90014 1.27843 0.95873 1.05677 0.88405 1.70659 1.07113 1.33544 1.31621 0.81609 0.70160 0.69238 0.78805 1.27294 1.21846 1.22023 1.65816 1.05226 1.30133 1.33836 1.17921 0.88167 0.85173 0.88016 1.42211 1.08144 1.05438 1.85517 0.94153 0.93509 0.93977 0.88146 0.88076 0.90670 0.78029 0.77357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 9.58 36.01 0.34 -0.77 14 2 C -0.34 -7.28 5.94 -103.91 -0.62 -7.89 14 3 C -0.01 -0.26 9.82 -39.39 -0.39 -0.64 14 4 C -0.31 -7.47 9.83 -38.66 -0.38 -7.85 14 5 C 0.28 7.72 6.42 -85.00 -0.55 7.18 14 6 C -0.47 -13.36 9.57 -37.74 -0.36 -13.72 14 7 H 0.08 2.29 8.06 -52.49 -0.42 1.87 14 8 C 0.04 1.20 5.52 -17.34 -0.10 1.11 14 9 N -0.81 -22.56 13.65 55.55 0.76 -21.81 14 10 Si 1.16 29.36 25.45 -169.99 -4.33 25.03 14 11 H -0.34 -8.43 7.11 56.52 0.40 -8.03 14 12 H -0.29 -7.27 6.94 56.52 0.39 -6.88 14 13 H -0.29 -7.37 6.94 56.52 0.39 -6.97 14 14 N -0.62 -16.26 4.56 -10.33 -0.05 -16.30 14 15 C 0.45 10.22 7.73 -155.31 -1.20 9.02 14 16 N -0.87 -15.73 8.97 31.14 0.28 -15.45 14 17 H 0.04 0.61 8.14 -51.93 -0.42 0.18 14 18 H 0.05 0.69 8.09 -51.93 -0.42 0.27 14 19 H 0.04 0.60 6.55 -51.93 -0.34 0.26 14 20 H 0.10 1.85 8.06 -52.48 -0.42 1.43 14 21 H 0.10 2.33 8.06 -52.49 -0.42 1.91 14 22 H 0.28 7.53 8.72 -40.82 -0.36 7.17 14 23 H 0.39 6.83 8.95 -40.82 -0.37 6.47 14 24 H 0.40 5.74 6.79 -40.82 -0.28 5.46 14 LS Contribution 209.45 15.07 3.16 3.16 Total: -1.00 -30.13 209.45 -5.69 -35.81 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -2.26 Total: 3.14 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.24 Total: -13.58 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.99 Total: -53.56 kcal Atomic # 14 Polarization: 29.36 SS G_CDS: -4.33 Total: 25.03 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -30.13 -5.69 -35.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307016436.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.065 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds