Wall clock time and date at job start Mon Mar 30 2020 01:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50690 * 120.00302 * 2 1 4 4 N 1.46499 * 109.47113 * 125.00101 * 3 2 1 5 5 C 1.36418 * 126.55823 * 265.02115 * 4 3 2 6 6 C 1.36219 * 107.19767 * 179.97438 * 5 4 3 7 7 N 1.32756 * 108.61652 * 0.26917 * 6 5 4 8 8 C 1.32987 * 109.22682 * 359.56246 * 7 6 5 9 9 C 1.39994 * 125.96158 * 180.17102 * 8 7 6 10 10 H 1.08001 * 119.99489 * 180.30553 * 9 8 7 11 11 C 1.40233 * 120.00202 * 0.30809 * 9 8 7 12 12 N 1.30691 * 120.00201 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99827 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47392 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47163 * 119.99860 * 13 11 9 16 16 H 1.48495 * 109.47244 * 239.99718 * 13 11 9 17 17 H 1.07995 * 120.00517 * 179.97438 * 1 2 3 18 18 H 1.08000 * 119.99563 * 0.02562 * 1 2 3 19 19 H 1.08000 * 119.99563 * 179.97438 * 2 1 3 20 20 H 1.08996 * 109.47426 * 5.00272 * 3 2 1 21 21 H 1.08996 * 109.47557 * 245.00112 * 3 2 1 22 22 H 1.08008 * 126.40257 * 359.94819 * 5 4 3 23 23 H 1.08002 * 125.68842 * 179.97438 * 6 5 4 24 24 H 0.96993 * 120.00262 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3317 1.1314 5 6 2.7645 1.8804 2.3591 6 6 3.8875 1.6833 3.1045 7 7 4.7814 1.0411 2.3623 8 6 4.2653 0.8080 1.1591 9 6 4.9065 0.1496 0.1030 10 1 4.3963 0.0166 -0.8396 11 6 6.2112 -0.3371 0.2690 12 7 6.8287 -0.1757 1.4095 13 14 7.0664 -1.2162 -1.1400 14 1 6.1589 -1.2690 -2.3142 15 1 8.3045 -0.4811 -1.5033 16 1 7.4155 -2.5978 -0.7224 17 1 -0.5401 -0.9352 -0.0004 18 1 -0.5399 0.9353 -0.0004 19 1 1.8499 -0.9353 0.0004 20 1 1.3587 2.1316 0.0896 21 1 2.6213 1.4025 -0.9313 22 1 1.8614 2.3785 2.6801 23 1 4.0289 2.0012 4.1270 24 1 7.7312 -0.5121 1.5242 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307327036.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:53 Heat of formation + Delta-G solvation = 56.377861 kcal Electronic energy + Delta-G solvation = -10141.672817 eV Core-core repulsion = 8248.814293 eV Total energy + Delta-G solvation = -1892.858525 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.74714 -36.21426 -35.25070 -32.53152 -30.58738 -27.29230 -26.46460 -21.95155 -21.33896 -20.73078 -18.59900 -17.48464 -16.50128 -16.07670 -15.37569 -14.59638 -14.52411 -13.95657 -13.66656 -13.24531 -12.87419 -12.71327 -12.38997 -12.18022 -11.83163 -11.11822 -10.43670 -9.87570 -9.75779 -9.01956 -8.32099 -6.28097 1.23633 1.37288 1.43491 1.59582 1.84521 2.27804 2.77443 2.81229 3.62828 3.95957 4.09992 4.40721 4.54891 4.66008 4.75859 5.01082 5.19818 5.37981 5.64406 5.67063 5.80765 6.18450 6.30345 6.69931 7.02320 7.40860 8.30842 8.64872 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.041485 B = 0.016206 C = 0.012207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.786366 B = 1727.296886 C = 2293.228293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.187 4.187 3 C 0.147 3.853 4 N -0.505 5.505 5 C -0.150 4.150 6 C -0.061 4.061 7 N -0.567 5.567 8 C 0.338 3.662 9 C -0.490 4.490 10 H 0.087 0.913 11 C 0.030 3.970 12 N -0.795 5.795 13 Si 0.993 3.007 14 H -0.251 1.251 15 H -0.269 1.269 16 H -0.270 1.270 17 H 0.115 0.885 18 H 0.118 0.882 19 H 0.088 0.912 20 H 0.103 0.897 21 H 0.081 0.919 22 H 0.176 0.824 23 H 0.151 0.849 24 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.294 0.061 -5.359 9.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.206 4.206 3 C 0.025 3.975 4 N -0.194 5.194 5 C -0.281 4.281 6 C -0.212 4.212 7 N -0.290 5.290 8 C 0.093 3.907 9 C -0.530 4.530 10 H 0.105 0.895 11 C -0.188 4.188 12 N -0.422 5.422 13 Si 0.813 3.187 14 H -0.174 1.174 15 H -0.194 1.194 16 H -0.195 1.195 17 H 0.133 0.867 18 H 0.136 0.864 19 H 0.107 0.893 20 H 0.122 0.878 21 H 0.100 0.900 22 H 0.193 0.807 23 H 0.169 0.831 24 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.465 -0.135 -5.025 9.000 hybrid contribution -0.219 -0.073 -0.318 0.393 sum -7.684 -0.208 -5.343 9.362 Atomic orbital electron populations 1.24025 0.94291 1.03490 0.97689 1.23160 0.97029 0.97968 1.02460 1.20685 0.91479 0.96832 0.88524 1.45709 1.13730 1.48190 1.11727 1.22459 1.02751 1.14923 0.87984 1.22602 0.92838 1.05518 1.00268 1.71151 1.30196 1.24205 1.03419 1.20624 0.80964 0.95204 0.93901 1.18546 1.00086 1.36717 0.97632 0.89457 1.26781 0.97403 0.95555 0.99101 1.70174 1.11785 1.34674 1.25517 0.85011 0.78177 0.77731 0.77736 1.17423 1.19390 1.19480 0.86690 0.86421 0.89332 0.87838 0.90046 0.80671 0.83145 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 14.32 67.78 0.97 -2.91 14 2 C -0.19 -6.22 9.85 25.64 0.25 -5.97 14 3 C 0.15 5.39 6.29 85.63 0.54 5.92 14 4 N -0.51 -24.44 2.79 -524.91 -1.47 -25.91 14 5 C -0.15 -6.99 11.60 83.51 0.97 -6.02 14 6 C -0.06 -3.25 11.85 84.08 1.00 -2.25 14 7 N -0.57 -35.16 9.41 -194.17 -1.83 -36.98 14 8 C 0.34 19.75 7.43 133.59 0.99 20.74 14 9 C -0.49 -27.72 9.02 23.18 0.21 -27.51 14 10 H 0.09 4.52 7.29 -2.91 -0.02 4.50 14 11 C 0.03 1.64 5.50 85.35 0.47 2.11 14 12 N -0.80 -47.05 11.90 21.88 0.26 -46.79 14 13 Si 0.99 40.36 29.56 68.60 2.03 42.39 14 14 H -0.25 -9.53 7.11 99.48 0.71 -8.82 14 15 H -0.27 -10.55 7.11 99.48 0.71 -9.84 14 16 H -0.27 -10.61 7.11 99.48 0.71 -9.90 14 17 H 0.11 2.41 8.06 -2.91 -0.02 2.38 14 18 H 0.12 2.35 7.84 -2.91 -0.02 2.32 14 19 H 0.09 3.38 8.06 -2.91 -0.02 3.36 14 20 H 0.10 3.06 7.79 -2.39 -0.02 3.04 14 21 H 0.08 3.00 7.60 -2.39 -0.02 2.98 14 22 H 0.18 6.47 8.06 -2.91 -0.02 6.45 14 23 H 0.15 7.01 8.06 -2.91 -0.02 6.99 14 24 H 0.28 14.75 8.29 -92.71 -0.77 13.98 14 Total: -1.00 -71.30 221.87 5.57 -65.73 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.18 Total: 17.44 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 5.40 Total: -15.88 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -3.03 Total: -109.68 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -71.30 5.57 -65.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307327036.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.105 kcal (2) G-P(sol) polarization free energy of solvation -71.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds