Wall clock time and date at job start Mon Mar 30 2020 01:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38699 * 120.93206 * 2 1 4 4 N 1.39725 * 120.35872 * 359.97438 * 3 2 1 5 5 C 1.39283 * 119.27368 * 179.97438 * 3 2 1 6 6 N 1.32014 * 121.21405 * 359.97438 * 5 3 2 7 7 C 1.31463 * 122.05716 * 0.02562 * 6 5 3 8 8 C 1.40799 * 120.56330 * 0.02562 * 7 6 5 9 9 C 1.41429 * 120.62668 * 179.97438 * 8 7 6 10 10 H 1.07989 * 120.00319 * 155.64558 * 9 8 7 11 11 C 1.39935 * 119.99621 * 335.64680 * 9 8 7 12 12 N 1.30832 * 120.00172 * 342.09047 * 11 9 8 13 13 Si 1.86799 * 119.99832 * 162.09135 * 11 9 8 14 14 H 1.48498 * 109.47256 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47066 * 119.99742 * 13 11 9 16 16 H 1.48503 * 109.46788 * 239.99796 * 13 11 9 17 17 H 1.09001 * 109.47465 * 270.02521 * 1 2 3 18 18 H 1.09001 * 109.47120 * 30.02033 * 1 2 3 19 19 H 1.08993 * 109.47195 * 150.02439 * 1 2 3 20 20 H 0.97002 * 119.99251 * 180.02562 * 4 3 2 21 21 H 0.96991 * 120.00062 * 0.02562 * 4 3 2 22 22 H 1.08002 * 119.39497 * 180.25660 * 5 3 2 23 23 H 1.07998 * 119.72026 * 179.97438 * 7 6 5 24 24 H 0.96996 * 120.00190 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2199 1.1897 0.0000 4 7 1.5487 2.4152 -0.0005 5 6 3.6122 1.1494 0.0005 6 7 4.2634 0.0011 0.0016 7 6 3.6383 -1.1555 0.0016 8 6 2.2314 -1.2090 0.0000 9 6 1.5576 -2.4524 -0.0005 10 1 0.5509 -2.5213 0.3841 11 6 2.1956 -3.5936 -0.4992 12 7 3.2448 -3.4718 -1.2714 13 14 1.5494 -5.2910 -0.0626 14 1 0.3618 -5.1569 0.8188 15 1 1.1661 -6.0093 -1.3045 16 1 2.6069 -6.0562 0.6456 17 1 -0.3634 0.0005 1.0277 18 1 -0.3633 0.8898 -0.5142 19 1 -0.3633 -0.8901 -0.5134 20 1 2.0527 3.2441 -0.0009 21 1 0.5791 2.4371 -0.0005 22 1 4.1693 2.0747 0.0048 23 1 4.2089 -2.0724 0.0020 24 1 3.6868 -4.2628 -1.6174 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307453025.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:52 Heat of formation + Delta-G solvation = -7.548090 kcal Electronic energy + Delta-G solvation = -10197.735150 eV Core-core repulsion = 8302.104588 eV Total energy + Delta-G solvation = -1895.630562 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.32503 -36.21426 -35.47696 -33.30728 -29.88323 -28.22783 -27.02411 -23.02588 -22.08778 -19.28654 -18.11578 -17.01412 -16.46110 -16.35357 -15.38013 -14.77584 -14.62184 -13.48109 -13.39266 -13.25628 -12.95179 -12.83214 -12.55618 -12.16931 -11.71266 -11.62603 -11.13211 -9.86389 -9.54044 -8.70214 -8.14995 -6.39383 0.94759 1.20777 1.41845 1.56077 1.58321 2.21461 2.79678 3.30028 3.80712 4.37169 4.53051 4.61832 4.90251 4.98171 5.03264 5.22179 5.26731 5.49088 5.78396 5.90325 6.16650 6.45214 6.63277 6.86906 7.01932 7.27603 7.93414 8.30369 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.061667 B = 0.014716 C = 0.012284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.940858 B = 1902.242331 C = 2278.837373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.268 4.268 3 C 0.193 3.807 4 N -0.864 5.864 5 C -0.122 4.122 6 N -0.471 5.471 7 C -0.034 4.034 8 C 0.072 3.928 9 C -0.473 4.473 10 H 0.088 0.912 11 C 0.035 3.965 12 N -0.819 5.819 13 Si 0.988 3.012 14 H -0.253 1.253 15 H -0.265 1.265 16 H -0.266 1.266 17 H 0.053 0.947 18 H 0.063 0.937 19 H 0.052 0.948 20 H 0.402 0.598 21 H 0.400 0.600 22 H 0.139 0.861 23 H 0.127 0.873 24 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 2.581 1.623 6.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.280 4.280 3 C 0.087 3.913 4 N -0.408 5.408 5 C -0.281 4.281 6 N -0.179 5.179 7 C -0.200 4.200 8 C 0.067 3.933 9 C -0.503 4.503 10 H 0.106 0.894 11 C -0.182 4.182 12 N -0.444 5.444 13 Si 0.808 3.192 14 H -0.176 1.176 15 H -0.190 1.190 16 H -0.190 1.190 17 H 0.071 0.929 18 H 0.082 0.918 19 H 0.071 0.929 20 H 0.231 0.769 21 H 0.230 0.770 22 H 0.156 0.844 23 H 0.145 0.855 24 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.547 2.492 1.474 5.390 hybrid contribution -0.833 -0.403 -0.060 0.927 sum -5.380 2.089 1.414 5.942 Atomic orbital electron populations 1.20138 0.90399 1.01263 1.00509 1.19985 0.96652 0.91284 1.20098 1.18383 0.92357 0.87016 0.93543 1.42139 1.08848 1.03781 1.85998 1.21697 0.90081 0.95583 1.20694 1.66888 1.42340 0.99167 1.09513 1.22568 0.92834 0.93721 1.10864 1.18556 0.92960 0.93637 0.88176 1.19833 1.01783 0.92358 1.36301 0.89352 1.26924 0.94028 1.05632 0.91586 1.69889 1.18197 1.34006 1.22322 0.85079 0.79467 0.75453 0.79245 1.17634 1.18978 1.19047 0.92852 0.91821 0.92936 0.76887 0.76988 0.84395 0.85549 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.58 9.07 71.24 0.65 -1.93 14 2 C -0.27 -12.94 5.99 -19.09 -0.11 -13.06 14 3 C 0.19 8.56 6.76 38.24 0.26 8.82 14 4 N -0.86 -27.35 9.01 -51.24 -0.46 -27.81 14 5 C -0.12 -5.90 11.05 84.92 0.94 -4.96 14 6 N -0.47 -26.00 10.33 -193.07 -1.99 -27.99 14 7 C -0.03 -1.99 9.89 85.37 0.84 -1.15 14 8 C 0.07 3.97 5.58 -21.21 -0.12 3.85 14 9 C -0.47 -25.00 8.23 23.47 0.19 -24.81 14 10 H 0.09 4.39 6.93 -2.92 -0.02 4.37 14 11 C 0.03 1.72 5.15 85.25 0.44 2.16 14 12 N -0.82 -43.27 10.98 21.82 0.24 -43.03 14 13 Si 0.99 37.30 29.60 68.60 2.03 39.33 14 14 H -0.25 -9.20 7.11 99.48 0.71 -8.49 14 15 H -0.27 -9.56 7.11 99.48 0.71 -8.86 14 16 H -0.27 -9.77 7.11 99.48 0.71 -9.06 14 17 H 0.05 1.91 8.14 -2.39 -0.02 1.89 14 18 H 0.06 2.05 6.66 -2.39 -0.02 2.03 14 19 H 0.05 2.13 6.87 -2.39 -0.02 2.11 14 20 H 0.40 10.38 8.85 -92.71 -0.82 9.56 14 21 H 0.40 10.87 6.95 -92.72 -0.64 10.22 14 22 H 0.14 5.74 8.06 -2.91 -0.02 5.72 14 23 H 0.13 7.60 6.16 -2.91 -0.02 7.58 14 24 H 0.29 13.81 8.30 -92.71 -0.77 13.04 14 Total: -1.00 -63.15 209.87 2.67 -60.48 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.23 Total: 30.11 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 3.09 Total: -31.07 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -2.22 Total: -98.84 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -63.15 2.67 -60.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307453025.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.927 kcal (2) G-P(sol) polarization free energy of solvation -63.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds