Wall clock time and date at job start Mon Mar 30 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40153 * 125.79748 * 2 1 4 4 C 1.35123 * 107.98022 * 180.15443 * 3 2 1 5 5 N 1.36184 * 107.58542 * 359.62211 * 4 3 2 6 6 C 1.34776 * 126.11778 * 180.26220 * 5 4 3 7 7 O 1.21629 * 120.00078 * 0.02562 * 6 5 4 8 8 C 1.41775 * 119.99850 * 179.97438 * 6 5 4 9 9 H 1.07994 * 120.00033 * 0.02562 * 8 6 5 10 10 C 1.40233 * 119.99679 * 180.02562 * 8 6 5 11 11 N 1.30592 * 120.00170 * 359.97438 * 10 8 6 12 12 Si 1.86808 * 119.99768 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46708 * 89.99934 * 12 10 8 14 14 H 1.48500 * 109.47067 * 209.99570 * 12 10 8 15 15 H 1.48492 * 109.47259 * 330.00200 * 12 10 8 16 16 N 1.30754 * 125.79564 * 179.73349 * 2 1 3 17 17 H 1.09000 * 109.47280 * 270.24338 * 1 2 3 18 18 H 1.08999 * 109.46964 * 30.24762 * 1 2 3 19 19 H 1.09003 * 109.46829 * 150.24251 * 1 2 3 20 20 H 1.07999 * 126.01171 * 0.02562 * 3 2 1 21 21 H 1.08002 * 126.21064 * 179.88996 * 4 3 2 22 22 H 0.97002 * 119.99883 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3268 1.1368 0.0000 4 6 3.6132 0.7233 -0.0035 5 7 3.6077 -0.6385 0.0030 6 6 4.6933 -1.4373 0.0071 7 8 5.8074 -0.9494 0.0057 8 6 4.5364 -2.8463 0.0143 9 1 3.5472 -3.2795 0.0160 10 6 5.6659 -3.6774 0.0192 11 7 6.8622 -3.1535 0.0166 12 14 5.4594 -5.5340 0.0293 13 1 5.4050 -6.0336 -1.3681 14 1 6.6095 -6.1562 0.7330 15 1 4.1994 -5.8881 0.7308 16 7 2.2718 -1.0605 0.0049 17 1 -0.3634 0.0044 1.0276 18 1 -0.3633 0.8878 -0.5177 19 1 -0.3633 -0.8922 -0.5101 20 1 1.9896 2.1628 0.0004 21 1 4.4873 1.3577 -0.0060 22 1 7.6434 -3.7285 0.0204 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001764467.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:02 Heat of formation + Delta-G solvation = 30.079402 kcal Electronic energy + Delta-G solvation = -10254.649179 eV Core-core repulsion = 8197.505695 eV Total energy + Delta-G solvation = -2057.143484 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.55057 -36.88449 -33.04285 -32.07035 -29.65363 -27.90347 -26.58190 -22.02429 -19.58622 -19.27265 -17.24793 -15.92934 -14.62991 -14.61445 -13.67859 -13.28529 -12.91491 -12.89123 -12.31633 -11.55526 -11.54036 -11.45960 -11.04132 -10.85726 -10.45657 -9.72505 -9.16595 -8.50447 -8.24347 -7.97147 -6.63113 -5.12079 2.35015 3.01999 3.06342 3.12575 3.43919 3.73939 3.99268 4.25961 5.33013 5.46110 5.50123 5.90880 5.95466 6.07121 6.30670 6.40132 6.69005 7.08829 7.29477 7.84167 8.04791 8.20111 8.59468 8.98091 10.04075 10.26517 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.063145 B = 0.012900 C = 0.010774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.318520 B = 2169.943537 C = 2598.116907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.049 3.951 3 C -0.285 4.285 4 C 0.062 3.938 5 N -0.330 5.330 6 C 0.533 3.467 7 O -0.551 6.551 8 C -0.490 4.490 9 H 0.090 0.910 10 C 0.077 3.923 11 N -0.738 5.738 12 Si 0.925 3.075 13 H -0.266 1.266 14 H -0.275 1.275 15 H -0.258 1.258 16 N -0.271 5.271 17 H 0.069 0.931 18 H 0.070 0.930 19 H 0.068 0.932 20 H 0.138 0.862 21 H 0.168 0.832 22 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 2.168 -0.005 7.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C -0.314 4.314 4 C -0.081 4.081 5 N -0.128 5.128 6 C 0.349 3.651 7 O -0.430 6.430 8 C -0.523 4.523 9 H 0.108 0.892 10 C -0.147 4.147 11 N -0.365 5.365 12 Si 0.748 3.252 13 H -0.191 1.191 14 H -0.200 1.200 15 H -0.181 1.181 16 N -0.097 5.097 17 H 0.088 0.912 18 H 0.089 0.911 19 H 0.087 0.913 20 H 0.156 0.844 21 H 0.185 0.815 22 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.447 1.047 0.003 6.532 hybrid contribution 0.044 0.214 -0.001 0.218 sum -6.403 1.261 0.002 6.526 Atomic orbital electron populations 1.20065 0.87506 1.02552 1.02237 1.22466 0.96727 0.91280 1.01493 1.21316 0.91852 0.99163 1.19027 1.22850 0.98956 0.86949 0.99354 1.48586 1.06273 1.04869 1.53030 1.17217 0.80040 0.87543 0.80265 1.90685 1.21377 1.75801 1.55183 1.20400 0.95192 0.89456 1.47240 0.89167 1.26024 0.94295 1.02005 0.92423 1.69982 0.98802 1.37677 1.30057 0.86054 0.79253 0.80447 0.79428 1.19109 1.19952 1.18142 1.77254 0.87563 1.22801 1.22081 0.91182 0.91140 0.91305 0.84409 0.81480 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.52 14 2 C 0.05 0.96 7.21 -82.33 -0.59 0.36 14 3 C -0.28 -5.39 10.73 -39.97 -0.43 -5.82 14 4 C 0.06 1.37 11.05 -16.73 -0.18 1.19 14 5 N -0.33 -8.69 3.64 -14.68 -0.05 -8.75 14 6 C 0.53 15.95 7.62 -14.91 -0.11 15.84 14 7 O -0.55 -17.80 15.16 5.25 0.08 -17.72 14 8 C -0.49 -14.19 9.06 -37.48 -0.34 -14.53 14 9 H 0.09 2.52 7.45 -52.49 -0.39 2.13 14 10 C 0.08 2.09 5.50 -17.33 -0.10 1.99 14 11 N -0.74 -21.16 11.73 55.56 0.65 -20.51 14 12 Si 0.93 19.62 29.56 -169.99 -5.03 14.59 14 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 14 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 14 15 H -0.26 -5.36 7.11 56.52 0.40 -4.96 14 16 N -0.27 -6.54 11.73 33.71 0.40 -6.15 14 17 H 0.07 0.86 8.14 -51.93 -0.42 0.44 14 18 H 0.07 0.79 8.14 -51.93 -0.42 0.37 14 19 H 0.07 0.92 8.14 -51.93 -0.42 0.50 14 20 H 0.14 2.07 8.06 -52.49 -0.42 1.64 14 21 H 0.17 3.40 8.05 -52.49 -0.42 2.98 14 22 H 0.28 7.09 8.29 -40.82 -0.34 6.75 14 LS Contribution 211.05 15.07 3.18 3.18 Total: -1.00 -33.46 211.05 -3.79 -37.25 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -1.64 Total: -0.41 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.38 Total: -1.48 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.99 Total: -35.41 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.08 Total: -17.72 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -33.46 -3.79 -37.25 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001764467.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.326 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds