Wall clock time and date at job start Mon Mar 30 2020 01:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31236 * 1 3 3 Si 1.86809 * 119.99823 * 2 1 4 4 H 1.48500 * 109.47064 * 270.00014 * 3 2 1 5 5 H 1.48493 * 109.47168 * 29.99840 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00121 * 3 2 1 7 7 C 1.39018 * 120.00576 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00396 * 179.97438 * 7 2 1 9 9 N 1.37617 * 119.99868 * 0.02562 * 7 2 1 10 10 N 1.40615 * 127.42273 * 0.02562 * 9 7 2 11 11 N 1.28930 * 106.67251 * 179.97438 * 10 9 7 12 12 N 1.28412 * 110.32023 * 0.02562 * 11 10 9 13 13 C 1.30737 * 110.67581 * 359.97438 * 12 11 10 14 14 C 1.50694 * 126.40952 * 180.02562 * 13 12 11 15 15 C 1.52998 * 117.49794 * 8.60454 * 14 13 12 16 16 C 1.53003 * 117.50057 * 299.97903 * 14 13 12 17 17 H 0.96998 * 120.00114 * 359.97438 * 1 2 3 18 18 H 1.08999 * 115.55102 * 154.30380 * 14 13 12 19 19 H 1.09001 * 117.50285 * 359.97438 * 15 14 13 20 20 H 1.08999 * 117.50409 * 145.02220 * 15 14 13 21 21 H 1.08998 * 117.49819 * 214.97261 * 16 14 13 22 22 H 1.09001 * 117.49287 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2464 1.6178 0.0000 4 1 2.4938 2.0465 -1.4001 5 1 1.4438 2.6527 0.7000 6 1 3.5439 1.4403 0.7000 7 6 2.0076 -1.2039 0.0005 8 1 3.0875 -1.2038 0.0001 9 7 1.3196 -2.3957 0.0005 10 7 -0.0748 -2.5775 -0.0005 11 7 -0.2819 -3.8500 -0.0006 12 7 0.8350 -4.4836 0.0007 13 6 1.8400 -3.6475 0.0013 14 6 3.3033 -4.0078 0.0023 15 6 3.6685 -5.4796 -0.2003 16 6 3.8264 -4.8350 1.1783 17 1 -0.4850 0.8400 0.0004 18 1 3.9719 -3.2598 -0.4238 19 1 2.8505 -6.1875 -0.3340 20 1 4.5776 -5.7003 -0.7598 21 1 4.8393 -4.6315 1.5256 22 1 3.1122 -5.1183 1.9515 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018002122.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:55 Heat of formation + Delta-G solvation = 104.889942 kcal Electronic energy + Delta-G solvation = -10413.881708 eV Core-core repulsion = 8392.275003 eV Total energy + Delta-G solvation = -2021.606705 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.071 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.04213 -37.93949 -36.49736 -33.73861 -31.89209 -28.16061 -24.98332 -24.07116 -23.12594 -21.07356 -20.05743 -17.79109 -16.79307 -16.51694 -15.98849 -15.51724 -14.03038 -13.94923 -13.57869 -13.25195 -12.73825 -12.36636 -12.27416 -12.22583 -12.06238 -11.81730 -11.28132 -11.09835 -10.78395 -10.14348 -8.82149 -6.79563 0.82489 1.36712 1.56928 1.60402 1.86912 1.96743 2.40983 2.77238 3.13252 3.74204 3.90986 4.09510 4.28052 4.57541 4.83847 4.90618 4.99164 5.09280 5.35354 5.40788 5.45530 5.82508 6.43332 6.90669 8.19099 8.39479 Molecular weight = 180.07amu Principal moments of inertia in cm(-1) A = 0.050100 B = 0.015456 C = 0.012202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.745625 B = 1811.189008 C = 2294.185886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C -0.003 4.003 3 Si 1.034 2.966 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.235 1.235 7 C -0.322 4.322 8 H 0.161 0.839 9 N -0.170 5.170 10 N -0.163 5.163 11 N -0.180 5.180 12 N -0.364 5.364 13 C 0.091 3.909 14 C -0.084 4.084 15 C -0.142 4.142 16 C -0.149 4.149 17 H 0.293 0.707 18 H 0.138 0.862 19 H 0.083 0.917 20 H 0.135 0.865 21 H 0.136 0.864 22 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.990 1.360 0.452 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.219 4.219 3 Si 0.850 3.150 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.157 1.157 7 C -0.462 4.462 8 H 0.178 0.822 9 N 0.050 4.950 10 N -0.147 5.147 11 N -0.170 5.170 12 N -0.226 5.226 13 C -0.175 4.175 14 C -0.105 4.105 15 C -0.180 4.180 16 C -0.188 4.188 17 H 0.104 0.896 18 H 0.155 0.845 19 H 0.102 0.898 20 H 0.153 0.847 21 H 0.154 0.846 22 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.292 1.010 0.451 10.351 hybrid contribution 0.226 1.047 -0.028 1.071 sum 10.518 2.057 0.423 10.725 Atomic orbital electron populations 1.70266 1.09082 1.31328 1.32373 1.27286 0.96586 1.05193 0.92813 0.84380 0.78496 0.72210 0.79921 1.18170 1.19603 1.15735 1.21292 0.94143 0.80021 1.50719 0.82176 1.47832 1.05254 1.07252 1.34633 1.82902 0.91297 1.09389 1.31151 1.77511 1.19210 1.00249 1.20047 1.73532 0.94655 1.29695 1.24675 1.24577 0.97842 0.81444 1.13664 1.20092 0.84981 0.97551 1.07914 1.23033 1.03550 0.92002 0.99397 1.23071 1.02819 1.01733 0.91153 0.89613 0.84469 0.89846 0.84664 0.84620 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.22 11.93 21.66 0.26 -42.96 14 2 C 0.00 -0.12 5.50 84.97 0.47 0.34 14 3 Si 1.03 33.83 29.55 68.60 2.03 35.86 14 4 H -0.26 -8.06 7.11 99.48 0.71 -7.36 14 5 H -0.27 -8.81 7.11 99.48 0.71 -8.10 14 6 H -0.23 -6.77 7.11 99.48 0.71 -6.06 14 7 C -0.32 -15.98 10.10 83.97 0.85 -15.14 14 8 H 0.16 6.58 7.32 -2.91 -0.02 6.56 14 9 N -0.17 -9.56 3.77 -182.00 -0.69 -10.24 14 10 N -0.16 -10.22 11.90 37.02 0.44 -9.77 14 11 N -0.18 -11.07 13.38 37.02 0.50 -10.58 14 12 N -0.36 -20.30 11.77 -50.01 -0.59 -20.89 14 13 C 0.09 4.63 7.64 137.89 1.05 5.68 14 14 C -0.08 -3.04 5.92 -11.54 -0.07 -3.10 14 15 C -0.14 -4.11 10.15 30.60 0.31 -3.80 14 16 C -0.15 -4.33 10.23 30.60 0.31 -4.02 14 17 H 0.29 14.15 8.30 -92.71 -0.77 13.38 14 18 H 0.14 4.28 7.73 -2.39 -0.02 4.26 14 19 H 0.08 2.79 7.92 -2.39 -0.02 2.77 14 20 H 0.14 2.79 8.14 -2.39 -0.02 2.77 14 21 H 0.14 2.82 8.14 -2.39 -0.02 2.80 14 22 H 0.07 2.44 8.14 -2.39 -0.02 2.42 14 Total: -1.00 -71.28 208.88 6.10 -65.17 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.23 Total: 13.44 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 2.92 Total: -20.03 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -0.08 Total: -94.44 kcal Atomic # 14 Polarization: 33.83 SS G_CDS: 2.03 Total: 35.86 kcal Total: -71.28 6.10 -65.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018002122.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.062 kcal (2) G-P(sol) polarization free energy of solvation -71.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds