Wall clock time and date at job start Mon Mar 30 2020 01:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86801 * 119.99867 * 2 1 4 4 H 1.48497 * 109.47399 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47105 * 300.00195 * 3 2 1 6 6 H 1.48506 * 109.47403 * 59.99892 * 3 2 1 7 7 C 1.40070 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.41597 * 120.00105 * 359.97438 * 7 2 1 10 10 N 1.32752 * 128.82834 * 0.15114 * 9 7 2 11 11 O 1.20924 * 108.87788 * 180.24279 * 10 9 7 12 12 N 1.20779 * 116.15204 * 359.74065 * 11 10 9 13 13 C 1.30421 * 109.95015 * 0.02562 * 12 11 10 14 14 C 1.50690 * 128.65922 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.50063 * 60.02800 * 14 13 12 16 16 C 1.53002 * 60.02940 * 252.49714 * 15 14 13 17 17 H 0.97003 * 120.00137 * 359.97438 * 1 2 3 18 18 H 1.09007 * 115.55011 * 205.69589 * 14 13 12 19 19 H 1.09002 * 117.49833 * 359.97438 * 15 14 13 20 20 H 1.09002 * 117.49953 * 144.99860 * 15 14 13 21 21 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 22 22 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 3.7011 1.3465 0.0006 5 1 1.8823 2.3965 -1.2125 6 1 1.8823 2.3966 1.2125 7 6 2.0075 -1.2130 -0.0005 8 1 3.0875 -1.2129 -0.0001 9 6 1.2995 -2.4393 -0.0005 10 7 -0.0122 -2.6431 -0.0028 11 8 -0.2232 -3.8338 0.0029 12 7 0.7514 -4.5471 0.0043 13 6 1.8346 -3.8207 -0.0005 14 6 3.2718 -4.2736 -0.0005 15 6 3.7402 -5.1378 -1.1729 16 6 3.5431 -5.7655 0.2085 17 1 -0.4850 0.8401 0.0004 18 1 3.9872 -3.5677 0.4218 19 1 3.0086 -5.3792 -1.9440 20 1 4.7637 -5.0006 -1.5219 21 1 2.6820 -6.4195 0.3459 22 1 4.4369 -6.0408 0.7683 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018005720.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:05 Heat of formation + Delta-G solvation = 114.266320 kcal Electronic energy + Delta-G solvation = -10363.239976 eV Core-core repulsion = 8309.747110 eV Total energy + Delta-G solvation = -2053.492866 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.32986 -36.83721 -34.14073 -32.05238 -31.51901 -26.75647 -23.87219 -22.04024 -21.62781 -19.37545 -17.20724 -16.72843 -16.28886 -15.07731 -14.59659 -13.97397 -13.00621 -12.00074 -11.52953 -11.39215 -11.18223 -11.11879 -10.67925 -10.44784 -10.33560 -9.86169 -9.65082 -9.27251 -8.79499 -8.29044 -6.72963 -4.69354 2.92392 2.98377 3.06305 3.11372 3.73904 3.90392 4.42104 4.93921 5.15061 5.26150 5.43557 5.59645 5.96990 6.07427 6.13543 6.20922 6.52149 6.57644 6.93248 7.09886 7.30558 8.17210 8.40421 8.72179 10.24734 10.88782 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.051499 B = 0.014416 C = 0.011617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.565845 B = 1941.849081 C = 2409.774292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.069 3.931 3 Si 0.920 3.080 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.430 4.430 8 H 0.092 0.908 9 C 0.159 3.841 10 N -0.428 5.428 11 O 0.254 5.746 12 N -0.396 5.396 13 C -0.057 4.057 14 C -0.044 4.044 15 C -0.172 4.172 16 C -0.176 4.176 17 H 0.280 0.720 18 H 0.119 0.881 19 H 0.090 0.910 20 H 0.094 0.906 21 H 0.096 0.904 22 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.449 -2.349 -0.359 6.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.153 4.153 3 Si 0.744 3.256 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.110 0.890 9 C 0.010 3.990 10 N -0.179 5.179 11 O 0.056 5.944 12 N -0.121 5.121 13 C -0.221 4.221 14 C -0.063 4.063 15 C -0.210 4.210 16 C -0.213 4.213 17 H 0.091 0.909 18 H 0.137 0.863 19 H 0.109 0.891 20 H 0.113 0.887 21 H 0.114 0.886 22 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.058 -2.837 -0.354 5.810 hybrid contribution 1.239 1.258 -0.005 1.766 sum 6.297 -1.578 -0.360 6.502 Atomic orbital electron populations 1.69855 1.07322 1.28981 1.32601 1.25937 0.94976 1.01261 0.93141 0.86063 0.80516 0.80460 0.78561 1.18299 1.19798 1.19808 1.18663 0.94131 0.87114 1.46876 0.88977 1.22683 0.87389 0.92798 0.96089 1.76175 1.16355 0.92411 1.32968 1.84738 1.29280 1.12739 1.67691 1.74132 0.96283 1.23939 1.17794 1.24710 0.93937 0.91385 1.12050 1.19787 0.90461 0.93031 1.03042 1.22960 1.01771 1.04361 0.91885 1.22958 1.02957 0.95822 0.99591 0.90908 0.86290 0.89097 0.88730 0.88554 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.96 12.14 55.55 0.67 -20.28 14 2 C 0.07 1.78 5.50 -17.34 -0.10 1.69 14 3 Si 0.92 18.70 29.56 -169.99 -5.02 13.68 14 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 14 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 7 C -0.43 -11.53 9.51 -37.61 -0.36 -11.89 14 8 H 0.09 2.26 7.85 -52.48 -0.41 1.84 14 9 C 0.16 4.46 7.15 -82.13 -0.59 3.88 14 10 N -0.43 -12.53 10.82 32.68 0.35 -12.17 14 11 O 0.25 6.91 11.64 27.28 0.32 7.23 14 12 N -0.40 -10.04 12.00 33.99 0.41 -9.63 14 13 C -0.06 -1.40 7.28 -79.13 -0.58 -1.98 14 14 C -0.04 -0.85 6.33 -91.74 -0.58 -1.43 14 15 C -0.17 -2.81 10.23 -26.73 -0.27 -3.08 14 16 C -0.18 -2.85 10.19 -26.69 -0.27 -3.12 14 17 H 0.28 6.94 8.29 -40.82 -0.34 6.61 14 18 H 0.12 2.15 8.14 -51.93 -0.42 1.73 14 19 H 0.09 1.58 8.14 -51.93 -0.42 1.16 14 20 H 0.09 1.28 8.14 -51.93 -0.42 0.85 14 21 H 0.10 1.67 8.04 -51.93 -0.42 1.25 14 22 H 0.09 1.23 8.14 -51.93 -0.42 0.81 14 LS Contribution 210.42 15.07 3.17 3.17 Total: -1.00 -29.99 210.42 -4.50 -34.48 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -1.65 Total: -0.54 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.74 Total: -15.94 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 1.44 Total: -42.08 kcal Atomic # 8 Polarization: 6.91 SS G_CDS: 0.32 Total: 7.23 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -29.99 -4.50 -34.48 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018005720.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.750 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds