Wall clock time and date at job start Mon Mar 30 2020 01:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00088 * 2 1 4 4 H 1.48494 * 109.47385 * 240.00254 * 3 2 1 5 5 H 1.48502 * 109.47196 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46941 * 119.99818 * 3 2 1 7 7 C 1.37879 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00477 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99697 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46849 * 179.97438 * 9 7 2 11 11 C 1.35870 * 119.93335 * 90.00217 * 10 9 7 12 12 C 1.36022 * 119.18850 * 179.97438 * 11 10 9 13 13 C 1.39805 * 119.08594 * 0.02562 * 12 11 10 14 14 N 1.31764 * 119.82935 * 359.97438 * 13 12 11 15 15 C 1.33522 * 120.81236 * 0.02562 * 14 13 12 16 16 O 1.21951 * 119.51853 * 179.97438 * 15 14 13 17 17 H 0.97000 * 120.00204 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.47221 * 60.00003 * 9 7 2 19 19 H 1.08990 * 109.47277 * 300.00043 * 9 7 2 20 20 H 1.07999 * 120.40632 * 0.02562 * 11 10 9 21 21 H 1.08004 * 120.45695 * 179.97438 * 12 11 10 22 22 H 1.08003 * 120.09130 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6436 -4.1279 1.1780 12 6 3.5271 -5.1620 1.1603 13 6 3.9584 -5.6664 -0.0702 14 7 3.5069 -5.1382 -1.1897 15 6 2.6397 -4.1232 -1.1660 16 8 2.2374 -3.6520 -2.2163 17 1 -0.4850 0.8400 0.0004 18 1 0.6247 -2.5571 -0.8897 19 1 0.6241 -2.5567 0.8902 20 1 2.2959 -3.7220 2.1165 21 1 3.8910 -5.5871 2.0841 22 1 4.6593 -6.4875 -0.1031 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019473973.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:18 Heat of formation + Delta-G solvation = -18.351312 kcal Electronic energy + Delta-G solvation = -10348.128457 eV Core-core repulsion = 8288.884859 eV Total energy + Delta-G solvation = -2059.243598 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.43602 -38.01601 -36.80144 -34.75465 -31.93194 -29.76852 -26.31396 -25.05676 -23.69155 -19.17403 -18.99899 -18.32029 -17.45411 -16.84155 -16.29983 -15.51858 -14.70072 -14.55115 -13.99780 -13.55539 -13.24326 -12.92735 -12.72595 -12.44378 -12.29304 -11.86033 -11.38224 -10.77417 -10.46031 -9.36661 -8.38915 -6.55615 -0.07767 0.84260 1.34178 1.38823 1.46187 1.78100 2.30837 2.93788 2.97102 3.51284 3.81069 4.04973 4.42665 4.57690 4.89185 4.96642 5.05324 5.44947 5.60867 5.73725 5.80276 6.49389 6.97504 7.14644 7.26694 8.69757 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.063263 B = 0.012407 C = 0.011999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.491240 B = 2256.219220 C = 2332.957139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.019 3.981 3 Si 0.974 3.026 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.560 4.560 8 H 0.052 0.948 9 C 0.236 3.764 10 N -0.500 5.500 11 C 0.179 3.821 12 C -0.286 4.286 13 C 0.241 3.759 14 N -0.602 5.602 15 C 0.604 3.396 16 O -0.609 6.609 17 H 0.274 0.726 18 H 0.013 0.987 19 H 0.062 0.938 20 H 0.200 0.800 21 H 0.210 0.790 22 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 -8.303 9.355 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.597 4.597 8 H 0.070 0.930 9 C 0.115 3.885 10 N -0.209 5.209 11 C 0.040 3.960 12 C -0.311 4.311 13 C 0.063 3.937 14 N -0.339 5.339 15 C 0.307 3.693 16 O -0.490 6.490 17 H 0.083 0.917 18 H 0.031 0.969 19 H 0.079 0.921 20 H 0.217 0.783 21 H 0.227 0.773 22 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.625 -7.937 7.718 12.902 hybrid contribution -0.274 1.282 0.277 1.340 sum 6.351 -6.655 7.996 12.188 Atomic orbital electron populations 1.70002 1.07481 1.28989 1.49132 1.25813 0.95880 1.03049 0.93446 0.85376 0.78332 0.77489 0.79112 1.20840 1.19717 1.17801 1.21387 0.93111 0.91190 1.54060 0.92950 1.19516 0.87789 0.82712 0.98496 1.46763 1.36916 1.29276 1.07985 1.23485 0.90707 0.91125 0.90720 1.22122 1.05012 1.01727 1.02209 1.24526 0.89247 0.93016 0.86900 1.69818 1.17344 1.13713 1.33024 1.18524 0.83239 0.83951 0.83605 1.90880 1.61801 1.63883 1.32394 0.91730 0.96850 0.92051 0.78286 0.77284 0.76215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.39 13.29 21.45 0.28 -53.11 14 2 C 0.02 1.08 5.46 84.66 0.46 1.54 14 3 Si 0.97 43.68 29.54 68.60 2.03 45.70 14 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 14 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 14 6 H -0.25 -10.50 7.11 99.48 0.71 -9.80 14 7 C -0.56 -31.76 9.38 25.60 0.24 -31.52 14 8 H 0.05 2.98 7.81 -2.91 -0.02 2.96 14 9 C 0.24 12.47 5.11 85.64 0.44 12.90 14 10 N -0.50 -22.28 2.57 -661.37 -1.70 -23.98 14 11 C 0.18 5.24 10.41 83.55 0.87 6.11 14 12 C -0.29 -5.82 10.07 22.13 0.22 -5.60 14 13 C 0.24 5.94 11.30 85.08 0.96 6.91 14 14 N -0.60 -24.51 10.48 -325.25 -3.41 -27.92 14 15 C 0.60 30.53 8.34 179.50 1.50 32.03 14 16 O -0.61 -37.96 16.74 -5.16 -0.09 -38.04 14 17 H 0.27 14.86 8.31 -92.71 -0.77 14.09 14 18 H 0.01 0.83 7.39 -2.39 -0.02 0.81 14 19 H 0.06 3.03 8.03 -2.39 -0.02 3.01 14 20 H 0.20 4.35 8.06 -2.91 -0.02 4.33 14 21 H 0.21 1.78 8.06 -2.91 -0.02 1.75 14 22 H 0.22 2.76 8.06 -2.91 -0.02 2.74 14 Total: -1.00 -81.39 209.73 3.03 -78.36 By element: Atomic # 1 Polarization: -4.61 SS G_CDS: 1.22 Total: -3.39 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 4.69 Total: 22.38 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -4.83 Total: -105.01 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.09 Total: -38.04 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -81.39 3.03 -78.36 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019473973.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.008 kcal (2) G-P(sol) polarization free energy of solvation -81.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds