Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29208 * 127.05344 * 2 1 4 4 N 1.39081 * 112.45667 * 180.02562 * 3 2 1 5 5 C 1.29213 * 112.45395 * 0.02562 * 4 3 2 6 6 C 1.50698 * 127.05577 * 179.97438 * 5 4 3 7 7 C 1.51598 * 127.05154 * 180.02562 * 2 1 3 8 8 C 1.53004 * 110.65475 * 61.52719 * 7 2 1 9 9 C 1.50695 * 109.46637 * 288.88329 * 8 7 2 10 10 H 1.08004 * 120.00546 * 0.27598 * 9 8 7 11 11 C 1.37885 * 119.99721 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47228 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46793 * 120.00131 * 13 11 9 16 16 H 1.48500 * 109.47000 * 240.00224 * 13 11 9 17 17 H 1.08997 * 109.47090 * 269.97256 * 1 2 3 18 18 H 1.09000 * 109.47289 * 29.97604 * 1 2 3 19 19 H 1.08999 * 109.46847 * 149.97500 * 1 2 3 20 20 H 1.08997 * 109.47134 * 269.99743 * 6 5 4 21 21 H 1.08995 * 109.47208 * 30.00080 * 6 5 4 22 22 H 1.09007 * 109.47131 * 150.00396 * 6 5 4 23 23 H 1.09002 * 110.79704 * 298.49971 * 7 2 1 24 24 H 1.08992 * 109.47421 * 168.88375 * 8 7 2 25 25 H 1.08997 * 109.46955 * 48.87828 * 8 7 2 26 26 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2855 1.0312 0.0000 4 7 3.6314 0.6807 -0.0006 5 6 3.8081 -0.5993 -0.0015 6 6 5.1236 -1.3345 -0.0029 7 6 2.4204 -1.2099 -0.0005 8 6 2.2009 -2.0513 -1.2594 9 6 0.8647 -2.7430 -1.1745 10 1 0.2331 -2.5935 -0.3112 11 6 0.4457 -3.5617 -2.2018 12 7 1.2124 -3.7395 -3.2554 13 14 -1.2103 -4.4197 -2.0962 14 1 -1.8747 -4.0578 -0.8184 15 1 -2.0624 -3.9926 -3.2350 16 1 -1.0104 -5.8901 -2.1516 17 1 -0.3633 -0.0005 1.0276 18 1 -0.3634 0.8902 -0.5135 19 1 -0.3633 -0.8898 -0.5142 20 1 5.4400 -1.5111 -1.0309 21 1 5.8752 -0.7352 0.5108 22 1 5.0069 -2.2891 0.5104 23 1 2.2655 -1.8121 0.8947 24 1 2.9915 -2.7971 -1.3405 25 1 2.2201 -1.4046 -2.1366 26 1 0.9178 -4.3158 -3.9779 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020216458.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = 28.936960 kcal Electronic energy + Delta-G solvation = -10563.204524 eV Core-core repulsion = 8641.844594 eV Total energy + Delta-G solvation = -1921.359930 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.61949 -35.55041 -34.13418 -32.95360 -30.29826 -27.98113 -27.40716 -23.91822 -20.94983 -19.77446 -18.37107 -16.73155 -16.49545 -15.52884 -15.03028 -14.58862 -14.21320 -14.16066 -13.42260 -13.25690 -13.12031 -13.03927 -12.80662 -12.63856 -12.37755 -11.76926 -11.48849 -10.94083 -10.80488 -10.53466 -10.23552 -8.18952 -6.29433 0.16014 1.46480 1.49079 1.59994 1.82293 2.43546 2.87946 3.11071 3.18428 3.72698 4.01885 4.32635 4.56830 4.70849 4.73413 4.78283 4.82748 4.90224 5.11513 5.33896 5.38924 5.42652 5.62489 5.77114 6.13426 6.82426 7.23274 7.39483 8.93079 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.050397 B = 0.013465 C = 0.011331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.456133 B = 2079.035171 C = 2470.552568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.130 3.870 3 N -0.383 5.383 4 N -0.372 5.372 5 C 0.103 3.897 6 C -0.079 4.079 7 C -0.129 4.129 8 C 0.070 3.930 9 C -0.530 4.530 10 H 0.084 0.916 11 C 0.006 3.994 12 N -0.932 5.932 13 Si 0.961 3.039 14 H -0.250 1.250 15 H -0.286 1.286 16 H -0.284 1.284 17 H 0.110 0.890 18 H 0.082 0.918 19 H 0.102 0.898 20 H 0.092 0.908 21 H 0.097 0.903 22 H 0.104 0.896 23 H 0.135 0.865 24 H 0.021 0.979 25 H -0.021 1.021 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 0.137 6.786 6.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.055 4.055 3 N -0.193 5.193 4 N -0.181 5.181 5 C -0.082 4.082 6 C -0.137 4.137 7 C -0.151 4.151 8 C 0.031 3.969 9 C -0.568 4.568 10 H 0.102 0.898 11 C -0.193 4.193 12 N -0.572 5.572 13 Si 0.786 3.214 14 H -0.173 1.173 15 H -0.212 1.212 16 H -0.210 1.210 17 H 0.128 0.872 18 H 0.100 0.900 19 H 0.121 0.879 20 H 0.110 0.890 21 H 0.116 0.884 22 H 0.122 0.878 23 H 0.152 0.848 24 H 0.039 0.961 25 H -0.002 1.002 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.654 2.079 6.645 6.993 hybrid contribution -0.941 -1.766 -0.516 2.067 sum -0.287 0.313 6.129 6.144 Atomic orbital electron populations 1.20760 0.83968 1.05438 1.04941 1.27202 0.99346 0.91433 0.87476 1.75990 0.96503 1.28727 1.18032 1.75942 1.09592 1.15916 1.16641 1.27485 0.98495 0.92986 0.89247 1.20524 0.88451 1.00113 1.04641 1.22407 0.89760 0.99038 1.03925 1.18571 0.97876 0.92393 0.88026 1.21597 1.03038 1.27060 1.05077 0.89784 1.25908 1.01091 0.97368 0.94885 1.70101 1.39219 1.39001 1.08908 0.85449 0.79221 0.77942 0.78822 1.17321 1.21222 1.20976 0.87182 0.89970 0.87949 0.88980 0.88399 0.87777 0.84783 0.96084 1.00228 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.05 10.19 71.24 0.73 -2.32 15 2 C 0.13 5.26 7.02 46.65 0.33 5.59 15 3 N -0.38 -17.16 12.33 -40.01 -0.49 -17.65 15 4 N -0.37 -16.29 12.33 -40.00 -0.49 -16.78 15 5 C 0.10 3.92 7.06 46.65 0.33 4.25 15 6 C -0.08 -2.16 10.51 71.24 0.75 -1.41 15 7 C -0.13 -5.20 2.98 -11.71 -0.03 -5.23 15 8 C 0.07 3.39 4.50 29.85 0.13 3.53 15 9 C -0.53 -26.19 7.43 25.60 0.19 -26.00 15 10 H 0.08 3.78 6.30 -2.91 -0.02 3.76 15 11 C 0.01 0.31 5.46 84.66 0.46 0.77 15 12 N -0.93 -52.97 13.29 21.45 0.28 -52.68 15 13 Si 0.96 40.11 29.54 68.60 2.03 42.14 15 14 H -0.25 -9.54 7.11 99.48 0.71 -8.83 15 15 H -0.29 -12.03 7.11 99.48 0.71 -11.32 15 16 H -0.28 -11.83 7.11 99.48 0.71 -11.12 15 17 H 0.11 2.85 8.14 -2.39 -0.02 2.83 15 18 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 19 H 0.10 3.64 5.16 -2.39 -0.01 3.63 15 20 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 21 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 22 H 0.10 2.37 8.14 -2.38 -0.02 2.35 15 23 H 0.13 4.88 8.14 -2.39 -0.02 4.86 15 24 H 0.02 1.05 8.14 -2.39 -0.02 1.03 15 25 H -0.02 -1.16 8.12 -2.39 -0.02 -1.18 15 26 H 0.26 14.17 8.31 -92.71 -0.77 13.40 15 Total: -1.00 -64.59 228.83 5.37 -59.21 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.16 Total: 6.58 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 2.88 Total: -20.82 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -0.70 Total: -87.11 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -64.59 5.37 -59.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020216458.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.150 kcal (2) G-P(sol) polarization free energy of solvation -64.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds