Wall clock time and date at job start Mon Mar 30 2020 01:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48494 * 109.47100 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47189 * 300.00140 * 3 2 1 6 6 H 1.48497 * 109.47208 * 60.00021 * 3 2 1 7 7 C 1.40458 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.41025 * 119.99938 * 359.97438 * 7 2 1 10 10 O 1.21434 * 119.99892 * 0.02562 * 9 7 2 11 11 C 1.50706 * 119.99934 * 180.02562 * 9 7 2 12 12 H 1.08991 * 109.63830 * 330.42008 * 11 9 7 13 13 C 1.53022 * 109.63983 * 91.05582 * 11 9 7 14 14 C 1.50065 * 110.19829 * 168.92917 * 13 11 9 15 15 C 1.29443 * 124.07980 * 343.32387 * 14 13 11 16 16 C 1.50070 * 124.07366 * 359.94620 * 15 14 13 17 17 C 1.53027 * 110.14693 * 343.13269 * 16 15 14 18 18 H 0.96997 * 120.00250 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.36071 * 289.32733 * 13 11 9 20 20 H 1.08994 * 109.36386 * 49.04982 * 13 11 9 21 21 H 1.08004 * 117.96441 * 163.07979 * 14 13 11 22 22 H 1.08002 * 117.96781 * 180.23731 * 15 14 13 23 23 H 1.09000 * 109.35664 * 103.33988 * 16 15 14 24 24 H 1.09003 * 109.36112 * 222.92697 * 16 15 14 25 25 H 1.08997 * 109.64512 * 169.11725 * 17 16 15 26 26 H 1.09001 * 109.64307 * 289.75441 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 3.6992 1.3464 -0.0006 5 1 1.8804 2.3965 -1.2125 6 1 1.8805 2.3964 1.2125 7 6 2.0076 -1.2164 -0.0005 8 1 3.0876 -1.2163 -0.0001 9 6 1.3025 -2.4377 -0.0005 10 8 0.0882 -2.4377 -0.0005 11 6 2.0561 -3.7428 -0.0005 12 1 3.0123 -3.6136 -0.5073 13 6 2.2903 -4.2015 1.4404 14 6 2.7937 -5.6151 1.4589 15 6 2.7068 -6.4291 0.4562 16 6 2.0893 -6.0734 -0.8645 17 6 1.2303 -4.8149 -0.7229 18 1 -0.4850 0.8400 0.0004 19 1 3.0237 -3.5481 1.9129 20 1 1.3521 -4.1505 1.9929 21 1 3.2611 -5.9744 2.3638 22 1 3.0990 -7.4279 0.5792 23 1 2.8778 -5.8924 -1.5949 24 1 1.4659 -6.8998 -1.2062 25 1 0.9444 -4.4534 -1.7106 26 1 0.3378 -5.0441 -0.1406 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034084791.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:48 Heat of formation + Delta-G solvation = -48.218284 kcal Electronic energy + Delta-G solvation = -10607.080572 eV Core-core repulsion = 8650.082188 eV Total energy + Delta-G solvation = -1956.998383 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.28205 -35.81687 -32.58947 -30.30936 -30.13870 -26.77474 -22.94626 -22.08014 -19.12851 -17.08429 -16.32770 -15.58498 -14.87058 -13.78160 -13.42330 -12.86899 -12.64383 -12.49840 -11.89007 -11.67079 -11.33664 -11.22704 -10.75286 -10.48748 -10.33407 -9.83566 -9.73591 -9.50778 -8.87290 -8.50181 -7.26299 -6.15505 -4.83642 2.74024 3.06235 3.16529 3.21439 4.07040 4.28400 5.24973 5.34078 5.60670 5.67257 5.87105 6.06013 6.16361 6.27002 6.33061 6.46943 6.66255 6.71045 6.89848 7.02191 7.23453 7.24836 7.32523 7.43501 8.16121 8.89189 8.98528 10.41374 10.66368 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.073592 B = 0.011444 C = 0.010789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.386610 B = 2446.092450 C = 2594.630993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.083 3.917 3 Si 0.902 3.098 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.370 3.630 10 O -0.545 6.545 11 C -0.126 4.126 12 H 0.065 0.935 13 C -0.074 4.074 14 C -0.146 4.146 15 C -0.167 4.167 16 C -0.090 4.090 17 C -0.098 4.098 18 H 0.271 0.729 19 H 0.070 0.930 20 H 0.071 0.929 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -5.730 0.539 7.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.264 3.736 10 O -0.434 6.434 11 C -0.146 4.146 12 H 0.084 0.916 13 C -0.111 4.111 14 C -0.164 4.164 15 C -0.186 4.186 16 C -0.127 4.127 17 C -0.136 4.136 18 H 0.082 0.918 19 H 0.088 0.912 20 H 0.089 0.911 21 H 0.112 0.888 22 H 0.110 0.890 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.658 -5.694 0.541 7.376 hybrid contribution 0.734 0.715 0.075 1.027 sum 5.392 -4.979 0.615 7.365 Atomic orbital electron populations 1.69970 1.07493 1.27667 1.32003 1.26028 0.94547 1.00879 0.92534 0.86400 0.80912 0.81638 0.78427 1.18476 1.19949 1.19946 1.20900 0.94850 0.92054 1.48891 0.91380 1.19433 0.88828 0.87422 0.77923 1.90385 1.15648 1.88806 1.48555 1.21741 0.99893 0.98079 0.94849 0.91635 1.20281 1.00813 0.92362 0.97634 1.22226 0.99708 0.96587 0.97851 1.21987 1.01900 0.98633 0.96038 1.20485 0.98774 0.98354 0.95066 1.21371 0.97952 0.93571 1.00674 0.91795 0.91192 0.91074 0.88769 0.88950 0.91620 0.92058 0.92273 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.86 11.72 55.57 0.65 -21.21 15 2 C 0.08 2.28 5.50 -17.27 -0.10 2.19 15 3 Si 0.90 19.75 29.56 -169.99 -5.03 14.73 15 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 7 C -0.54 -15.10 9.19 -37.69 -0.35 -15.45 15 8 H 0.07 1.79 7.85 -52.48 -0.41 1.37 15 9 C 0.37 10.46 5.95 -33.25 -0.20 10.26 15 10 O -0.55 -17.45 14.86 5.42 0.08 -17.37 15 11 C -0.13 -2.86 2.48 -91.55 -0.23 -3.09 15 12 H 0.07 1.44 8.08 -51.93 -0.42 1.02 15 13 C -0.07 -1.49 5.42 -28.18 -0.15 -1.64 15 14 C -0.15 -2.45 9.80 -35.90 -0.35 -2.80 15 15 C -0.17 -2.66 9.80 -35.90 -0.35 -3.01 15 16 C -0.09 -1.48 6.12 -28.17 -0.17 -1.65 15 17 C -0.10 -2.03 4.78 -26.51 -0.13 -2.16 15 18 H 0.27 7.15 8.29 -40.82 -0.34 6.81 15 19 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 20 H 0.07 1.53 8.10 -51.93 -0.42 1.11 15 21 H 0.09 1.36 8.06 -52.48 -0.42 0.93 15 22 H 0.09 1.24 8.06 -52.49 -0.42 0.81 15 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.06 1.39 8.08 -51.93 -0.42 0.97 15 LS Contribution 225.60 15.07 3.40 3.40 Total: -1.00 -31.75 225.60 -6.26 -38.01 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.34 Total: -0.21 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.02 Total: -17.35 kcal Atomic # 7 Polarization: -21.86 SS G_CDS: 0.65 Total: -21.21 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.08 Total: -17.37 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -31.75 -6.26 -38.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034084791.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.208 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds