Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00163 * 2 1 4 4 H 1.48503 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47158 * 300.00324 * 3 2 1 6 6 H 1.48505 * 109.47019 * 60.00169 * 3 2 1 7 7 C 1.37877 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99968 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.34387 * 126.46037 * 265.02634 * 10 9 7 12 12 N 1.30924 * 109.48942 * 179.97438 * 11 10 9 13 13 C 1.33147 * 109.82845 * 0.02562 * 12 11 10 14 14 C 1.38174 * 107.55118 * 359.97438 * 13 12 11 15 15 C 1.41480 * 126.97834 * 180.02562 * 14 13 12 16 16 O 1.21422 * 120.00376 * 179.97438 * 15 14 13 17 17 H 0.97003 * 119.99403 * 359.97438 * 1 2 3 18 18 H 1.08993 * 109.47400 * 59.99887 * 9 7 2 19 19 H 1.08996 * 109.47210 * 299.99725 * 9 7 2 20 20 H 1.08005 * 125.25115 * 0.22636 * 11 10 9 21 21 H 1.08009 * 126.22311 * 180.02562 * 13 12 11 22 22 H 1.08004 * 120.00271 * 359.97161 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 2.6506 -4.2796 -1.0801 12 7 3.4899 -5.2099 -0.7002 13 6 3.6206 -5.1867 0.6246 14 6 2.8107 -4.1758 1.1056 15 6 2.6381 -3.7937 2.4568 16 8 1.8896 -2.8802 2.7386 17 1 -0.4849 0.8401 0.0004 18 1 0.6247 -2.5563 -0.8919 19 1 0.6240 -2.5574 0.8880 20 1 2.3655 -4.0766 -2.1018 21 1 4.2464 -5.8390 1.2158 22 1 3.1722 -4.3146 3.2378 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039061803.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = 19.794265 kcal Electronic energy + Delta-G solvation = -10362.805980 eV Core-core repulsion = 8305.216499 eV Total energy + Delta-G solvation = -2057.589481 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.39679 -37.89815 -34.04543 -32.08069 -29.83659 -27.33452 -23.96305 -23.08419 -20.84699 -19.14810 -16.90649 -16.44509 -15.18612 -14.63585 -14.51821 -14.35546 -13.08294 -12.99710 -12.87572 -12.34248 -11.82088 -11.12287 -10.93217 -10.35559 -10.01496 -9.63169 -9.12790 -8.76593 -8.62201 -7.92505 -6.27985 -4.34250 1.67683 3.19813 3.26775 3.30678 3.41931 3.68312 3.84424 4.28933 5.01020 5.08703 5.18977 5.72128 5.81473 5.91236 6.42074 6.93868 7.09060 7.36176 7.61385 7.84016 7.89868 8.12534 8.55284 8.68328 9.31650 10.81515 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.051924 B = 0.013986 C = 0.012803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.117749 B = 2001.535469 C = 2186.454213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.226 3.774 10 N -0.385 5.385 11 C 0.197 3.803 12 N -0.519 5.519 13 C 0.035 3.965 14 C -0.144 4.144 15 C 0.394 3.606 16 O -0.450 6.450 17 H 0.267 0.733 18 H 0.049 0.951 19 H 0.066 0.934 20 H 0.201 0.799 21 H 0.173 0.827 22 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -6.233 1.432 7.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.107 3.893 10 N -0.060 5.060 11 C -0.086 4.086 12 N -0.238 5.238 13 C -0.124 4.124 14 C -0.261 4.261 15 C 0.253 3.747 16 O -0.322 6.322 17 H 0.077 0.923 18 H 0.067 0.933 19 H 0.084 0.916 20 H 0.218 0.782 21 H 0.190 0.810 22 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.924 -5.935 1.047 7.192 hybrid contribution 0.069 1.420 0.393 1.475 sum 3.993 -4.516 1.440 6.198 Atomic orbital electron populations 1.69927 1.06080 1.27552 1.49069 1.24897 0.94967 0.99478 0.94239 0.86283 0.79939 0.82511 0.77816 1.19622 1.20646 1.20575 1.21129 0.93364 0.89392 1.53111 0.91946 1.20077 0.87123 0.81569 1.00505 1.46337 1.30161 1.24153 1.05355 1.24929 0.96834 0.92408 0.94398 1.69984 1.18899 1.22190 1.12701 1.22941 1.00013 0.98019 0.91443 1.21429 1.08177 1.04337 0.92199 1.21719 0.81318 0.83169 0.88525 1.90684 1.30889 1.24973 1.85680 0.92312 0.93270 0.91574 0.78218 0.80954 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.29 55.43 0.74 -24.86 14 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 14 3 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 14 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 14 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 14 7 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 14 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 14 9 C 0.23 5.73 5.23 -5.20 -0.03 5.70 14 10 N -0.38 -8.46 2.76 -117.15 -0.32 -8.78 14 11 C 0.20 3.84 12.49 -90.61 -1.13 2.71 14 12 N -0.52 -9.88 11.19 -14.10 -0.16 -10.04 14 13 C 0.04 0.60 11.92 -17.00 -0.20 0.40 14 14 C -0.14 -2.83 6.77 -83.70 -0.57 -3.40 14 15 C 0.39 7.18 11.43 31.97 0.37 7.55 14 16 O -0.45 -10.51 15.68 5.43 0.09 -10.42 14 17 H 0.27 7.23 8.31 -40.82 -0.34 6.89 14 18 H 0.05 1.24 8.13 -51.93 -0.42 0.82 14 19 H 0.07 1.84 6.72 -51.93 -0.35 1.49 14 20 H 0.20 3.28 8.06 -52.48 -0.42 2.85 14 21 H 0.17 2.16 8.06 -52.48 -0.42 1.74 14 22 H 0.10 1.27 8.06 -52.48 -0.42 0.85 14 LS Contribution 211.60 15.07 3.19 3.19 Total: -1.00 -31.96 211.60 -5.06 -37.02 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: -1.58 Total: -2.29 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.98 Total: -0.31 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.26 Total: -43.68 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -31.96 -5.06 -37.02 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039061803.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.817 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds