Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99778 * 2 1 4 4 H 1.48498 * 109.47326 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46945 * 299.99795 * 3 2 1 6 6 H 1.48503 * 109.47053 * 59.99412 * 3 2 1 7 7 C 1.37876 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99862 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47325 * 179.97438 * 9 7 2 11 11 C 1.35905 * 126.06543 * 269.99764 * 10 9 7 12 12 N 1.30067 * 109.30957 * 179.74487 * 11 10 9 13 13 C 1.35956 * 108.89643 * 0.40634 * 12 11 10 14 14 C 1.46507 * 126.37405 * 179.85723 * 13 12 11 15 15 O 1.21346 * 119.99867 * 179.41078 * 14 13 12 16 16 C 1.35205 * 126.07041 * 89.99697 * 10 9 7 17 17 H 0.96998 * 120.00272 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.47324 * 59.99450 * 9 7 2 19 19 H 1.09011 * 109.46985 * 299.99610 * 9 7 2 20 20 H 1.08000 * 125.34466 * 0.02562 * 11 10 9 21 21 H 1.08002 * 120.00208 * 359.69656 * 14 13 12 22 22 H 1.07991 * 126.66490 * 359.97438 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.7231 -4.2207 -1.0980 12 7 3.5366 -5.1638 -0.7231 13 6 3.5656 -5.2059 0.6355 14 6 4.3531 -6.1262 1.4597 15 8 4.2991 -6.0544 2.6698 16 6 2.7205 -4.2176 1.0934 17 1 -0.4850 0.8400 -0.0004 18 1 0.6248 -2.5571 -0.8896 19 1 0.6242 -2.5567 0.8904 20 1 2.4996 -3.9588 -2.1217 21 1 4.9851 -6.8655 0.9902 22 1 2.5126 -3.9737 2.1246 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039061805.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -4.284019 kcal Electronic energy + Delta-G solvation = -9999.330338 eV Core-core repulsion = 7940.696744 eV Total energy + Delta-G solvation = -2058.633594 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.86864 -39.55894 -35.98689 -34.05063 -30.70566 -29.49700 -26.00893 -24.62318 -21.98228 -21.04829 -18.93804 -18.19102 -16.72064 -16.55843 -16.19076 -15.76327 -14.91184 -14.75707 -14.51646 -14.15133 -13.74466 -13.06276 -12.76404 -12.37391 -11.90976 -11.32416 -10.84484 -10.72530 -10.55182 -9.49076 -8.41528 -6.57696 0.38892 1.36161 1.37386 1.44647 1.52139 2.07180 2.33149 2.47106 2.92685 3.39456 3.82000 4.10849 4.34790 4.46354 4.81878 4.86176 5.41317 5.47592 5.62256 5.71859 6.16553 6.46584 6.58105 7.00470 7.15515 8.66840 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.064682 B = 0.010054 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.783516 B = 2784.301957 C = 2903.960145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.240 3.760 10 N -0.430 5.430 11 C 0.177 3.823 12 N -0.475 5.475 13 C -0.152 4.152 14 C 0.445 3.555 15 O -0.512 6.512 16 C 0.025 3.975 17 H 0.274 0.726 18 H 0.053 0.947 19 H 0.038 0.962 20 H 0.229 0.771 21 H 0.151 0.849 22 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 -5.089 -1.363 6.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.201 1.201 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.120 3.880 10 N -0.106 5.106 11 C -0.107 4.107 12 N -0.194 5.194 13 C -0.280 4.280 14 C 0.307 3.693 15 O -0.387 6.387 16 C -0.119 4.119 17 H 0.083 0.917 18 H 0.071 0.929 19 H 0.057 0.943 20 H 0.245 0.755 21 H 0.167 0.833 22 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.149 -5.345 -1.266 6.884 hybrid contribution -0.469 1.628 0.401 1.741 sum 3.680 -3.717 -0.865 5.301 Atomic orbital electron populations 1.69989 1.07288 1.28955 1.49035 1.25705 0.95746 1.02742 0.93487 0.85313 0.78534 0.78430 0.78267 1.19645 1.19595 1.20097 1.21487 0.93444 0.90912 1.54176 0.92561 1.19606 0.87097 0.81805 0.99518 1.45993 1.32558 1.25434 1.06662 1.25585 0.96728 0.93500 0.94883 1.70546 1.18688 1.19655 1.10548 1.22431 1.08518 1.05084 0.91925 1.23225 0.77828 0.81761 0.86517 1.90513 1.60780 1.68874 1.18518 1.23438 0.98486 0.95878 0.94127 0.91675 0.92882 0.94347 0.75466 0.83294 0.80217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.74 13.29 21.45 0.28 -48.46 14 2 C 0.03 1.28 5.46 84.65 0.46 1.74 14 3 Si 0.97 40.72 29.54 68.60 2.03 42.75 14 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 14 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 14 6 H -0.28 -11.33 7.11 99.48 0.71 -10.63 14 7 C -0.56 -28.74 9.39 25.60 0.24 -28.49 14 8 H 0.06 2.95 7.81 -2.91 -0.02 2.93 14 9 C 0.24 11.07 5.86 85.63 0.50 11.57 14 10 N -0.43 -17.62 2.70 -531.32 -1.44 -19.05 14 11 C 0.18 6.47 12.53 180.11 2.26 8.73 14 12 N -0.47 -17.36 11.33 -188.40 -2.13 -19.49 14 13 C -0.15 -5.50 7.09 40.57 0.29 -5.22 14 14 C 0.45 13.41 11.75 69.98 0.82 14.23 14 15 O -0.51 -18.34 17.71 -3.24 -0.06 -18.40 14 16 C 0.03 0.99 11.33 84.08 0.95 1.94 14 17 H 0.27 13.70 8.31 -92.71 -0.77 12.93 14 18 H 0.05 2.46 8.14 -2.39 -0.02 2.45 14 19 H 0.04 1.87 8.14 -2.38 -0.02 1.85 14 20 H 0.23 6.77 8.06 -2.91 -0.02 6.74 14 21 H 0.15 3.13 8.06 -2.91 -0.02 3.11 14 22 H 0.18 6.70 8.06 -2.92 -0.02 6.68 14 Total: -1.00 -58.46 215.88 5.42 -53.03 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 1.22 Total: 5.11 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.52 Total: 4.50 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.29 Total: -87.00 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.06 Total: -18.40 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -58.46 5.42 -53.03 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039061805.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.748 kcal (2) G-P(sol) polarization free energy of solvation -58.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds