Wall clock time and date at job start Mon Mar 30 2020 01:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.36124 * 299.99676 * 9 7 2 11 11 C 1.50070 * 109.35848 * 59.72728 * 9 7 2 12 12 C 1.29253 * 124.22080 * 137.49200 * 11 9 7 13 13 C 1.50073 * 124.01678 * 359.25726 * 12 11 9 14 14 C 1.53017 * 110.14620 * 17.27076 * 13 12 11 15 15 C 1.53028 * 109.35458 * 180.27525 * 9 7 2 16 16 H 1.09000 * 109.64271 * 310.04330 * 15 9 7 17 17 C 1.50696 * 109.64097 * 70.67251 * 15 9 7 18 18 O 1.20759 * 120.00240 * 239.99573 * 17 15 9 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08001 * 117.95759 * 317.30635 * 11 9 7 21 21 H 1.07998 * 118.02043 * 179.37755 * 12 11 9 22 22 H 1.08995 * 109.35750 * 257.06233 * 13 12 11 23 23 H 1.08998 * 109.24010 * 137.40799 * 13 12 11 24 24 H 1.09000 * 109.64149 * 190.87385 * 14 13 12 25 25 H 1.09000 * 109.64511 * 70.24678 * 14 13 12 26 26 H 1.08005 * 120.00394 * 60.00376 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5548 0.8909 11 6 0.3847 -2.5733 -1.2226 12 6 0.2475 -3.6307 -1.9532 13 6 0.9495 -4.9305 -1.6890 14 6 1.4787 -4.9615 -0.2536 15 6 2.2478 -3.6603 0.0081 16 1 2.9911 -3.5102 -0.7748 17 6 2.9280 -3.7351 1.3507 18 8 4.1278 -3.6213 1.4269 19 1 -0.4850 0.8401 0.0004 20 1 -0.1622 -1.6875 -1.5102 21 1 -0.4112 -3.5753 -2.8073 22 1 1.7824 -5.0390 -2.3836 23 1 0.2490 -5.7529 -1.8337 24 1 2.1467 -5.8136 -0.1277 25 1 0.6442 -5.0403 0.4430 26 1 2.3425 -3.8907 2.2449 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039061886.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:49 Heat of formation + Delta-G solvation = -54.625606 kcal Electronic energy + Delta-G solvation = -10717.916812 eV Core-core repulsion = 8760.640586 eV Total energy + Delta-G solvation = -1957.276226 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.47007 -38.55412 -34.92200 -32.28412 -31.32507 -27.26121 -24.58330 -23.32508 -21.56809 -18.70993 -18.60136 -17.13371 -16.42831 -16.30556 -15.41204 -15.21437 -14.35073 -14.21895 -13.85506 -13.50560 -13.10519 -12.79663 -12.63310 -12.20255 -12.12088 -11.72820 -11.27235 -10.90214 -10.56048 -10.19198 -9.44570 -8.17963 -6.30626 1.19796 1.35293 1.38425 1.49353 1.87419 2.39303 3.12479 3.57994 4.05931 4.13570 4.23440 4.69059 4.74507 4.79794 4.94334 5.02249 5.10490 5.13696 5.35923 5.51558 5.74982 5.86419 6.11119 6.21394 6.44597 6.59016 6.89140 7.37839 8.87113 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.039943 B = 0.016732 C = 0.012707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.826450 B = 1673.023309 C = 2202.947800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.043 0.957 9 C 0.081 3.919 10 H 0.028 0.972 11 C -0.107 4.107 12 C -0.217 4.217 13 C -0.073 4.073 14 C -0.101 4.101 15 C -0.145 4.145 16 H 0.060 0.940 17 C 0.374 3.626 18 O -0.516 6.516 19 H 0.264 0.736 20 H 0.082 0.918 21 H 0.095 0.905 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.367 -7.913 -0.587 7.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.061 0.939 9 C 0.063 3.937 10 H 0.046 0.954 11 C -0.126 4.126 12 C -0.235 4.235 13 C -0.110 4.110 14 C -0.138 4.138 15 C -0.164 4.164 16 H 0.079 0.921 17 C 0.234 3.766 18 O -0.391 6.391 19 H 0.073 0.927 20 H 0.100 0.900 21 H 0.113 0.887 22 H 0.085 0.915 23 H 0.109 0.891 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.117 -7.729 -0.551 7.750 hybrid contribution 0.161 1.495 -0.200 1.517 sum 0.278 -6.234 -0.751 6.286 Atomic orbital electron populations 1.70039 1.06787 1.27362 1.50545 1.25618 0.95649 1.01993 0.94557 0.85691 0.78845 0.80316 0.77982 1.20144 1.20315 1.20067 1.21482 0.92522 0.92073 1.51241 0.93909 1.17506 0.91613 0.91117 0.93471 0.95400 1.22323 0.96227 0.96826 0.97184 1.21995 1.04166 0.95940 1.01414 1.20311 0.99381 0.95254 0.96039 1.21525 0.99671 0.94633 0.98002 1.22161 0.99162 0.98228 0.96889 0.92105 1.26334 0.88719 0.66117 0.95422 1.90287 1.20523 1.37854 1.90439 0.92720 0.90014 0.88744 0.91480 0.89125 0.89924 0.90370 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.13 11.54 21.45 0.25 -50.88 15 2 C 0.02 1.19 5.26 84.66 0.45 1.64 15 3 Si 0.95 44.03 29.54 68.60 2.03 46.05 15 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 7 C -0.54 -29.39 8.14 25.60 0.21 -29.19 15 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 15 9 C 0.08 3.88 1.81 -12.48 -0.02 3.86 15 10 H 0.03 1.41 8.10 -2.39 -0.02 1.40 15 11 C -0.11 -5.00 8.55 27.22 0.23 -4.77 15 12 C -0.22 -8.25 9.80 27.22 0.27 -7.98 15 13 C -0.07 -2.17 6.12 29.66 0.18 -1.99 15 14 C -0.10 -3.00 5.29 30.73 0.16 -2.84 15 15 C -0.14 -5.70 2.04 -11.40 -0.02 -5.72 15 16 H 0.06 2.64 8.08 -2.39 -0.02 2.62 15 17 C 0.37 14.05 10.05 71.23 0.72 14.77 15 18 O -0.52 -22.79 17.91 -1.45 -0.03 -22.81 15 19 H 0.26 14.08 8.31 -92.71 -0.77 13.31 15 20 H 0.08 4.37 6.45 -2.91 -0.02 4.35 15 21 H 0.09 3.32 8.06 -2.91 -0.02 3.29 15 22 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.08 2.17 8.12 -2.39 -0.02 2.15 15 26 H 0.12 3.58 8.06 -2.91 -0.02 3.55 15 Total: -1.00 -62.17 224.70 5.56 -56.61 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.15 Total: 3.26 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 2.17 Total: -32.23 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.25 Total: -50.88 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.03 Total: -22.81 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -62.17 5.56 -56.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039061886.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.983 kcal (2) G-P(sol) polarization free energy of solvation -62.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds