Wall clock time and date at job start Mon Mar 30 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99834 * 2 1 4 4 H 1.48501 * 109.46949 * 239.99961 * 3 2 1 5 5 H 1.48496 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47136 * 120.00409 * 3 2 1 7 7 C 1.37871 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00137 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.81133 * 60.53031 * 9 7 2 11 11 O 1.20761 * 120.00006 * 239.47405 * 10 9 7 12 12 C 1.53026 * 109.64163 * 300.00011 * 9 7 2 13 13 C 1.50063 * 110.14824 * 190.87806 * 12 9 7 14 14 C 1.29449 * 124.07547 * 17.13229 * 13 12 9 15 15 C 1.50068 * 124.07443 * 359.55438 * 14 13 12 16 16 C 1.53010 * 110.15413 * 17.09099 * 15 14 13 17 17 H 0.96996 * 119.99671 * 359.97438 * 1 2 3 18 18 H 1.08001 * 120.00078 * 59.47045 * 10 9 7 19 19 H 1.09002 * 109.35508 * 311.08811 * 12 9 7 20 20 H 1.09004 * 109.35310 * 70.67296 * 12 9 7 21 21 H 1.07993 * 117.96466 * 197.10831 * 13 12 9 22 22 H 1.07996 * 117.96042 * 179.53186 * 14 13 12 23 23 H 1.09003 * 109.35760 * 137.31739 * 15 14 13 24 24 H 1.08996 * 109.35738 * 257.03696 * 15 14 13 25 25 H 1.09001 * 109.64797 * 190.89431 * 16 15 14 26 26 H 1.08999 * 109.62241 * 70.27821 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 0.3912 -2.5925 -1.2346 11 8 -0.8055 -2.7150 -1.1288 12 6 0.3703 -2.5846 1.2479 13 6 -0.1780 -3.9732 1.3996 14 6 0.3000 -5.0120 0.7928 15 6 1.4631 -4.9712 -0.1545 16 6 2.2442 -3.6678 0.0255 17 1 -0.4849 0.8400 0.0004 18 1 0.8451 -2.5497 -2.2136 19 1 0.9638 -2.3324 2.1267 20 1 -0.4549 -1.8783 1.1569 21 1 -1.0237 -4.1148 2.0561 22 1 -0.1672 -5.9675 0.9803 23 1 2.1209 -5.8173 0.0443 24 1 1.0967 -5.0315 -1.1793 25 1 2.9629 -3.5562 -0.7864 26 1 2.7668 -3.6834 0.9819 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039061915.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:51 Heat of formation + Delta-G solvation = -31.845079 kcal Electronic energy + Delta-G solvation = -11087.447634 eV Core-core repulsion = 9131.159246 eV Total energy + Delta-G solvation = -1956.288388 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.81596 -35.81676 -33.03958 -30.34662 -29.39924 -24.98163 -23.04763 -22.04988 -19.45386 -16.73427 -16.40932 -15.11112 -14.49443 -14.39043 -13.49225 -13.00418 -12.61256 -12.08056 -11.71428 -11.55732 -11.30138 -10.96831 -10.74349 -10.60295 -10.29957 -10.09527 -9.09011 -8.96156 -8.59685 -8.10220 -7.77692 -6.10170 -4.22395 3.22078 3.25994 3.32169 3.33235 3.74213 4.33689 5.16270 5.62949 5.73425 5.85693 6.02814 6.23649 6.36957 6.55175 6.58742 6.74081 6.92750 7.03118 7.22875 7.42856 7.56254 7.65900 7.85404 8.09447 8.22935 8.78875 9.10803 9.43780 10.92153 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.060860 B = 0.016091 C = 0.015148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.960089 B = 1739.637464 C = 1847.960998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.016 3.984 10 C 0.378 3.622 11 O -0.483 6.483 12 C -0.073 4.073 13 C -0.116 4.116 14 C -0.197 4.197 15 C -0.088 4.088 16 C -0.098 4.098 17 H 0.266 0.734 18 H 0.047 0.953 19 H 0.056 0.944 20 H 0.101 0.899 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 -4.869 0.320 5.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.015 3.985 10 C 0.236 3.764 11 O -0.355 6.355 12 C -0.110 4.110 13 C -0.134 4.134 14 C -0.215 4.215 15 C -0.125 4.125 16 C -0.136 4.136 17 H 0.076 0.924 18 H 0.063 0.937 19 H 0.074 0.926 20 H 0.119 0.881 21 H 0.101 0.899 22 H 0.102 0.898 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.346 -4.808 0.382 5.363 hybrid contribution 0.432 0.966 -0.003 1.058 sum 2.778 -3.842 0.379 4.756 Atomic orbital electron populations 1.69940 1.05708 1.27153 1.48319 1.25129 0.94990 0.99557 0.94444 0.86565 0.79525 0.82693 0.78765 1.20087 1.21256 1.20072 1.20881 0.92910 0.88782 1.52915 0.91615 1.18985 0.93166 0.94101 0.92244 1.25835 0.89203 0.66974 0.94424 1.90175 1.18935 1.36049 1.90354 1.20458 1.00812 0.92210 0.97526 1.22421 0.97296 0.96513 0.97177 1.21724 1.00214 0.97584 1.01980 1.20439 0.95668 0.98427 0.97941 1.21547 0.97554 0.93286 1.01188 0.92430 0.93676 0.92597 0.88089 0.89937 0.89848 0.92544 0.92470 0.92447 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.51 10.59 55.43 0.59 -23.92 15 2 C 0.06 1.66 5.16 -17.82 -0.09 1.57 15 3 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 15 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.52 -13.33 7.99 -34.44 -0.28 -13.60 15 8 H 0.07 1.64 7.75 -52.48 -0.41 1.23 15 9 C 0.02 0.39 0.48 -156.60 -0.08 0.31 15 10 C 0.38 9.36 7.44 36.00 0.27 9.63 15 11 O -0.48 -13.10 15.99 6.00 0.10 -13.00 15 12 C -0.07 -1.76 4.14 -28.18 -0.12 -1.88 15 13 C -0.12 -2.47 8.92 -35.90 -0.32 -2.79 15 14 C -0.20 -3.83 9.60 -35.90 -0.34 -4.18 15 15 C -0.09 -1.60 5.60 -28.18 -0.16 -1.76 15 16 C -0.10 -1.97 4.88 -26.52 -0.13 -2.10 15 17 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 18 H 0.05 1.06 8.06 -52.49 -0.42 0.64 15 19 H 0.06 1.34 8.10 -51.93 -0.42 0.92 15 20 H 0.10 2.78 6.07 -51.93 -0.32 2.46 15 21 H 0.08 1.63 8.06 -52.49 -0.42 1.21 15 22 H 0.08 1.44 8.06 -52.49 -0.42 1.02 15 23 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.06 1.04 7.40 -51.93 -0.38 0.65 15 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.06 1.17 8.12 -51.93 -0.42 0.75 15 LS Contribution 217.86 15.07 3.28 3.28 Total: -1.00 -28.44 217.86 -5.50 -33.93 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -3.20 Total: -0.93 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.24 Total: -14.80 kcal Atomic # 7 Polarization: -24.51 SS G_CDS: 0.59 Total: -23.92 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.10 Total: -13.00 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.44 -5.50 -33.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039061915.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.089 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds