Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34640 * 126.44112 * 2 1 4 4 N 1.31040 * 109.48175 * 180.27455 * 3 2 1 5 5 C 1.33100 * 109.78596 * 359.75090 * 4 3 2 6 6 C 1.38034 * 126.44168 * 179.85707 * 2 1 3 7 7 C 1.46692 * 126.95599 * 359.97438 * 6 2 1 8 8 O 1.22003 * 120.00463 * 359.70910 * 7 6 2 9 9 C 1.41586 * 119.99837 * 179.70742 * 7 6 2 10 10 H 1.08005 * 120.00379 * 350.64374 * 9 7 6 11 11 C 1.40365 * 119.99917 * 170.63790 * 9 7 6 12 12 N 1.30525 * 120.00025 * 165.97326 * 11 9 7 13 13 Si 1.86798 * 120.00148 * 345.69748 * 11 9 7 14 14 H 1.48501 * 109.46872 * 90.00093 * 13 11 9 15 15 H 1.48504 * 109.47339 * 209.99845 * 13 11 9 16 16 H 1.48496 * 109.47338 * 329.99992 * 13 11 9 17 17 H 1.09005 * 109.46775 * 270.14371 * 1 2 3 18 18 H 1.09001 * 109.46986 * 30.14038 * 1 2 3 19 19 H 1.08996 * 109.47116 * 150.14590 * 1 2 3 20 20 H 1.08001 * 125.25623 * 0.02700 * 3 2 1 21 21 H 1.07995 * 126.23193 * 179.97438 * 5 4 3 22 22 H 0.96993 * 119.99595 * 2.07625 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2648 1.0831 0.0000 4 7 3.5182 0.7009 -0.0059 5 6 3.5838 -0.6285 -0.0045 6 6 2.2849 -1.1104 0.0028 7 6 1.8658 -2.5162 0.0068 8 8 0.6790 -2.7990 0.0134 9 6 2.8386 -3.5449 0.0030 10 1 3.8794 -3.3035 -0.1548 11 6 2.4503 -4.8787 0.2046 12 7 3.2812 -5.8483 -0.0661 13 14 0.7474 -5.2658 0.8674 14 1 -0.2009 -5.4213 -0.2648 15 1 0.7955 -6.5273 1.6496 16 1 0.2936 -4.1567 1.7444 17 1 -0.3633 0.0026 1.0277 18 1 -0.3633 0.8887 -0.5160 19 1 -0.3633 -0.8913 -0.5115 20 1 1.9256 2.1085 0.0004 21 1 4.4853 -1.2230 -0.0087 22 1 4.1772 -5.6462 -0.3779 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039079919.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = -2.583116 kcal Electronic energy + Delta-G solvation = -10421.031288 eV Core-core repulsion = 8362.471451 eV Total energy + Delta-G solvation = -2058.559837 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.19303 -37.00777 -33.55043 -33.05080 -29.48713 -26.56201 -26.43611 -22.17311 -20.62801 -19.06019 -17.64395 -16.30513 -15.14267 -14.49424 -14.22336 -13.46687 -13.17533 -12.88635 -12.56145 -12.23455 -12.21129 -11.90686 -10.75182 -10.15420 -9.56137 -9.44310 -9.14530 -9.03512 -7.98664 -7.67069 -7.23969 -5.28357 2.23041 3.37607 3.39396 3.51812 3.65642 3.90481 4.23581 4.33000 5.12481 5.22140 5.33574 5.56273 5.63045 5.98199 6.14895 6.34228 6.79883 7.35554 7.45379 7.73310 7.78650 8.18227 8.47544 8.62073 9.71927 9.95134 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.061067 B = 0.015570 C = 0.012681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.402119 B = 1797.878525 C = 2207.524126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.439 5.439 3 C 0.149 3.851 4 N -0.504 5.504 5 C -0.003 4.003 6 C -0.039 4.039 7 C 0.408 3.592 8 O -0.597 6.597 9 C -0.547 4.547 10 H 0.080 0.920 11 C 0.057 3.943 12 N -0.793 5.793 13 Si 1.127 2.873 14 H -0.284 1.284 15 H -0.318 1.318 16 H -0.276 1.276 17 H 0.071 0.929 18 H 0.074 0.926 19 H 0.105 0.895 20 H 0.196 0.804 21 H 0.171 0.829 22 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 7.410 0.599 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.120 5.120 3 C -0.131 4.131 4 N -0.223 5.223 5 C -0.154 4.154 6 C -0.155 4.155 7 C 0.313 3.687 8 O -0.498 6.498 9 C -0.578 4.578 10 H 0.099 0.901 11 C -0.165 4.165 12 N -0.419 5.419 13 Si 0.957 3.043 14 H -0.211 1.211 15 H -0.249 1.249 16 H -0.203 1.203 17 H 0.089 0.911 18 H 0.092 0.908 19 H 0.124 0.876 20 H 0.213 0.787 21 H 0.188 0.812 22 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.741 6.673 0.946 8.240 hybrid contribution 0.748 1.011 -0.536 1.367 sum -3.993 7.684 0.410 8.669 Atomic orbital electron populations 1.22100 0.76435 1.04675 1.03463 1.45341 1.07806 1.06813 1.52070 1.24761 0.86225 0.93216 1.08893 1.69929 1.18734 1.13451 1.20152 1.22871 0.95919 0.89974 1.06657 1.23356 0.90705 0.91089 1.10395 1.17313 0.89079 0.83674 0.78682 1.90109 1.20199 1.82581 1.56899 1.21824 0.96930 0.93631 1.45391 0.90148 1.27587 1.07051 0.91457 0.90435 1.70541 1.07728 1.35746 1.27845 0.82457 0.71454 0.72946 0.77421 1.21058 1.24895 1.20279 0.91066 0.90752 0.87630 0.78745 0.81163 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.68 59.85 0.64 1.85 14 2 N -0.44 -8.74 3.17 -121.40 -0.39 -9.12 14 3 C 0.15 2.69 12.51 -90.29 -1.13 1.56 14 4 N -0.50 -10.54 11.19 -13.94 -0.16 -10.69 14 5 C 0.00 -0.06 11.38 -16.89 -0.19 -0.25 14 6 C -0.04 -0.93 6.95 -81.55 -0.57 -1.49 14 7 C 0.41 10.86 6.62 -34.89 -0.23 10.63 14 8 O -0.60 -16.38 10.78 4.92 0.05 -16.33 14 9 C -0.55 -14.92 9.37 -37.51 -0.35 -15.27 14 10 H 0.08 2.14 7.16 -52.48 -0.38 1.77 14 11 C 0.06 1.56 5.52 -17.31 -0.10 1.47 14 12 N -0.79 -21.45 13.64 55.57 0.76 -20.69 14 13 Si 1.13 27.86 26.30 -169.99 -4.47 23.39 14 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 14 15 H -0.32 -7.49 7.11 56.52 0.40 -7.09 14 16 H -0.28 -7.00 6.58 56.52 0.37 -6.63 14 17 H 0.07 1.05 8.14 -51.93 -0.42 0.63 14 18 H 0.07 0.87 8.14 -51.93 -0.42 0.44 14 19 H 0.11 1.93 6.49 -51.93 -0.34 1.59 14 20 H 0.20 2.52 8.06 -52.49 -0.42 2.10 14 21 H 0.17 3.59 7.40 -52.49 -0.39 3.20 14 22 H 0.29 7.38 8.72 -40.82 -0.36 7.03 14 LS Contribution 203.03 15.07 3.06 3.06 Total: -1.00 -30.86 203.03 -4.62 -35.48 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: -1.55 Total: -3.58 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.93 Total: -1.51 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.22 Total: -40.51 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.05 Total: -16.33 kcal Atomic # 14 Polarization: 27.86 SS G_CDS: -4.47 Total: 23.39 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -30.86 -4.62 -35.48 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039079919.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.900 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds