Wall clock time and date at job start Mon Mar 30 2020 02:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30318 * 125.97428 * 2 1 4 4 N 1.39877 * 109.23209 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.68036 * 180.02562 * 4 3 2 6 6 C 1.34509 * 108.64609 * 359.74737 * 4 3 2 7 7 C 1.50697 * 126.40779 * 180.26530 * 6 4 3 8 8 C 1.39275 * 107.18647 * 0.39442 * 6 4 3 9 9 C 1.41597 * 126.55748 * 179.86804 * 8 6 4 10 10 H 1.07996 * 119.99609 * 43.40949 * 9 8 6 11 11 C 1.39696 * 119.99980 * 223.41381 * 9 8 6 12 12 N 1.31033 * 119.99844 * 206.59567 * 11 9 8 13 13 Si 1.86794 * 120.00256 * 26.59415 * 11 9 8 14 14 H 1.48500 * 109.47387 * 264.65359 * 13 11 9 15 15 H 1.48500 * 109.47398 * 24.65267 * 13 11 9 16 16 H 1.48496 * 109.47398 * 144.65276 * 13 11 9 17 17 H 1.08999 * 109.47245 * 275.46369 * 1 2 3 18 18 H 1.09003 * 109.47024 * 35.46757 * 1 2 3 19 19 H 1.09004 * 109.46759 * 155.46096 * 1 2 3 20 20 H 1.08997 * 109.47303 * 89.96765 * 5 4 3 21 21 H 1.08998 * 109.47297 * 209.97697 * 5 4 3 22 22 H 1.08998 * 109.46464 * 329.97104 * 5 4 3 23 23 H 1.09000 * 109.47450 * 270.15874 * 7 6 4 24 24 H 1.09003 * 109.46859 * 30.15778 * 7 6 4 25 25 H 1.09002 * 109.47235 * 150.15115 * 7 6 4 26 26 H 0.97000 * 119.99675 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2725 1.0546 0.0000 4 7 3.6120 0.6517 0.0006 5 6 4.7731 1.5451 0.0013 6 6 3.6567 -0.6926 0.0066 7 6 4.8986 -1.5462 0.0149 8 6 2.3406 -1.1482 0.0007 9 6 1.9156 -2.4989 0.0012 10 1 2.3983 -3.2165 0.6480 11 6 0.8720 -2.9031 -0.8348 12 7 0.1336 -3.9353 -0.5087 13 14 0.5292 -1.9723 -2.4176 14 1 -0.5352 -0.9646 -2.1787 15 1 1.7675 -1.2870 -2.8671 16 1 0.0825 -2.9250 -3.4654 17 1 -0.3634 0.0978 1.0230 18 1 -0.3633 0.8370 -0.5963 19 1 -0.3633 -0.9349 -0.4268 20 1 5.0602 1.7670 1.0291 21 1 5.6042 1.0613 -0.5118 22 1 4.5186 2.4719 -0.5130 23 1 5.2035 -1.7542 -1.0107 24 1 5.6994 -1.0175 0.5319 25 1 4.6912 -2.4844 0.5297 26 1 -0.5913 -4.2157 -1.0891 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368313.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:05 Heat of formation + Delta-G solvation = 68.093914 kcal Electronic energy + Delta-G solvation = -10847.516713 eV Core-core repulsion = 8927.854756 eV Total energy + Delta-G solvation = -1919.661957 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.73917 -33.76965 -32.52339 -30.85110 -28.66326 -27.34659 -24.88046 -23.15415 -19.09800 -18.06808 -17.06855 -15.10205 -14.65229 -14.41570 -12.98404 -12.87051 -12.81560 -12.63646 -12.23578 -11.86998 -11.79808 -11.40585 -10.99572 -10.71778 -10.57212 -9.98215 -9.90069 -9.10307 -8.70627 -7.86295 -6.98070 -6.45472 -3.96803 2.93656 3.28245 3.36274 3.47917 3.63973 4.00976 4.31394 5.23648 5.32916 5.67136 5.81352 5.90994 5.99082 6.06590 6.32205 6.39304 6.54995 6.67670 6.79118 7.19399 7.44897 7.56000 7.87194 8.33819 8.67814 8.98684 9.05866 9.31874 10.62084 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.047559 B = 0.018412 C = 0.015911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.606067 B = 1520.418499 C = 1759.415971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.025 3.975 3 N -0.322 5.322 4 N -0.386 5.386 5 C 0.117 3.883 6 C -0.049 4.049 7 C -0.054 4.054 8 C -0.030 4.030 9 C -0.465 4.465 10 H 0.080 0.920 11 C 0.095 3.905 12 N -0.844 5.844 13 Si 0.871 3.129 14 H -0.260 1.260 15 H -0.262 1.262 16 H -0.290 1.290 17 H 0.063 0.937 18 H 0.051 0.949 19 H 0.082 0.918 20 H 0.055 0.945 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 5.876 -1.009 7.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.141 4.141 3 N -0.147 5.147 4 N -0.173 5.173 5 C -0.026 4.026 6 C -0.171 4.171 7 C -0.113 4.113 8 C -0.040 4.040 9 C -0.499 4.499 10 H 0.098 0.902 11 C -0.116 4.116 12 N -0.474 5.474 13 Si 0.697 3.303 14 H -0.186 1.186 15 H -0.186 1.186 16 H -0.217 1.217 17 H 0.082 0.918 18 H 0.070 0.930 19 H 0.101 0.899 20 H 0.073 0.927 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.072 7.012 -1.045 8.717 hybrid contribution -0.092 -0.444 -0.765 0.889 sum 4.980 6.568 -1.810 8.439 Atomic orbital electron populations 1.20300 0.88432 1.02303 1.01602 1.22544 0.95841 0.91845 1.03825 1.76439 0.86842 1.24052 1.27346 1.47378 1.04000 1.04212 1.61753 1.21418 0.85762 0.93969 1.01450 1.21432 0.97248 0.83151 1.15313 1.19919 0.92016 0.98355 1.00968 1.17895 0.88233 0.94040 1.03839 1.18177 1.16390 0.92128 1.23183 0.90188 1.25536 0.93451 0.94355 0.98272 1.69884 1.15227 1.26390 1.35868 0.87178 0.80143 0.79987 0.82952 1.18555 1.18639 1.21707 0.91812 0.92982 0.89944 0.92683 0.90925 0.90850 0.92616 0.93919 0.90591 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 8.88 36.01 0.32 -1.23 15 2 C 0.03 0.64 6.23 -81.84 -0.51 0.13 15 3 N -0.32 -7.94 12.47 34.00 0.42 -7.52 15 4 N -0.39 -8.60 3.98 -62.95 -0.25 -8.85 15 5 C 0.12 1.84 11.06 59.85 0.66 2.50 15 6 C -0.05 -1.16 7.06 -81.04 -0.57 -1.73 15 7 C -0.05 -1.03 9.71 36.00 0.35 -0.68 15 8 C -0.03 -0.80 4.69 -106.84 -0.50 -1.30 15 9 C -0.46 -13.18 9.31 -37.76 -0.35 -13.54 15 10 H 0.08 2.39 8.06 -52.49 -0.42 1.96 15 11 C 0.10 2.64 4.51 -17.35 -0.08 2.57 15 12 N -0.84 -23.93 13.94 55.54 0.77 -23.15 15 13 Si 0.87 21.56 24.75 -169.99 -4.21 17.35 15 14 H -0.26 -6.06 5.77 56.52 0.33 -5.73 15 15 H -0.26 -6.83 7.11 56.52 0.40 -6.43 15 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 17 H 0.06 1.33 8.14 -51.93 -0.42 0.91 15 18 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 19 H 0.08 1.98 3.62 -51.93 -0.19 1.79 15 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.07 0.97 7.65 -51.93 -0.40 0.57 15 22 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.04 0.67 7.72 -51.93 -0.40 0.27 15 25 H 0.08 1.48 7.98 -51.93 -0.41 1.06 15 26 H 0.27 7.12 8.30 -40.82 -0.34 6.78 15 LS Contribution 220.59 15.07 3.32 3.32 Total: -1.00 -31.54 220.59 -3.76 -35.31 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -3.15 Total: -3.20 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.68 Total: -13.27 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.95 Total: -39.52 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.21 Total: 17.35 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -31.54 -3.76 -35.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368313.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.401 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds