Wall clock time and date at job start Mon Mar 30 2020 02:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30318 * 125.97428 * 2 1 4 4 N 1.39877 * 109.23209 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.68036 * 180.02562 * 4 3 2 6 6 C 1.34509 * 108.64609 * 359.74737 * 4 3 2 7 7 C 1.50697 * 126.40779 * 180.26530 * 6 4 3 8 8 C 1.39275 * 107.18647 * 0.39442 * 6 4 3 9 9 C 1.41597 * 126.55748 * 179.86804 * 8 6 4 10 10 H 1.07996 * 119.99609 * 43.40949 * 9 8 6 11 11 C 1.39696 * 119.99980 * 223.41381 * 9 8 6 12 12 N 1.31033 * 119.99844 * 206.59567 * 11 9 8 13 13 Si 1.86794 * 120.00256 * 26.59415 * 11 9 8 14 14 H 1.48500 * 109.47387 * 264.65359 * 13 11 9 15 15 H 1.48500 * 109.47398 * 24.65267 * 13 11 9 16 16 H 1.48496 * 109.47398 * 144.65276 * 13 11 9 17 17 H 1.08999 * 109.47245 * 275.46369 * 1 2 3 18 18 H 1.09003 * 109.47024 * 35.46757 * 1 2 3 19 19 H 1.09004 * 109.46759 * 155.46096 * 1 2 3 20 20 H 1.08997 * 109.47303 * 89.96765 * 5 4 3 21 21 H 1.08998 * 109.47297 * 209.97697 * 5 4 3 22 22 H 1.08998 * 109.46464 * 329.97104 * 5 4 3 23 23 H 1.09000 * 109.47450 * 270.15874 * 7 6 4 24 24 H 1.09003 * 109.46859 * 30.15778 * 7 6 4 25 25 H 1.09002 * 109.47235 * 150.15115 * 7 6 4 26 26 H 0.97000 * 119.99675 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2725 1.0546 0.0000 4 7 3.6120 0.6517 0.0006 5 6 4.7731 1.5451 0.0013 6 6 3.6567 -0.6926 0.0066 7 6 4.8986 -1.5462 0.0149 8 6 2.3406 -1.1482 0.0007 9 6 1.9156 -2.4989 0.0012 10 1 2.3983 -3.2165 0.6480 11 6 0.8720 -2.9031 -0.8348 12 7 0.1336 -3.9353 -0.5087 13 14 0.5292 -1.9723 -2.4176 14 1 -0.5352 -0.9646 -2.1787 15 1 1.7675 -1.2870 -2.8671 16 1 0.0825 -2.9250 -3.4654 17 1 -0.3634 0.0978 1.0230 18 1 -0.3633 0.8370 -0.5963 19 1 -0.3633 -0.9349 -0.4268 20 1 5.0602 1.7670 1.0291 21 1 5.6042 1.0613 -0.5118 22 1 4.5186 2.4719 -0.5130 23 1 5.2035 -1.7542 -1.0107 24 1 5.6994 -1.0175 0.5319 25 1 4.6912 -2.4844 0.5297 26 1 -0.5913 -4.2157 -1.0891 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368313.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:05 Heat of formation + Delta-G solvation = 46.035824 kcal Electronic energy + Delta-G solvation = -10848.473224 eV Core-core repulsion = 8927.854756 eV Total energy + Delta-G solvation = -1920.618467 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.56876 -35.65203 -34.38135 -32.63853 -30.30681 -29.16481 -26.57248 -24.97610 -21.01623 -19.83009 -19.04086 -16.97353 -16.37948 -16.15072 -14.92406 -14.62385 -14.47058 -14.26702 -13.78504 -13.58554 -13.38675 -13.13004 -12.65976 -12.61363 -12.35220 -11.95497 -11.75550 -11.02018 -10.75764 -9.62753 -8.91576 -8.52947 -6.06969 1.09228 1.33456 1.41089 1.49683 2.02781 2.05447 2.31066 3.17136 3.92986 4.19168 4.39777 4.51004 4.51178 4.64747 4.69888 4.79508 4.88823 5.00433 5.18588 5.32194 5.58553 5.62864 5.94932 6.46634 6.62092 6.97910 7.12203 7.29333 8.59862 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.047559 B = 0.018412 C = 0.015911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.606067 B = 1520.418499 C = 1759.415971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.008 3.992 3 N -0.339 5.339 4 N -0.380 5.380 5 C 0.101 3.899 6 C -0.030 4.030 7 C -0.055 4.055 8 C -0.084 4.084 9 C -0.480 4.480 10 H 0.045 0.955 11 C 0.062 3.938 12 N -0.884 5.884 13 Si 0.922 3.078 14 H -0.239 1.239 15 H -0.281 1.281 16 H -0.281 1.281 17 H 0.076 0.924 18 H 0.072 0.928 19 H 0.067 0.933 20 H 0.079 0.921 21 H 0.103 0.897 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 7.664 -1.592 10.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.156 4.156 3 N -0.164 5.164 4 N -0.167 5.167 5 C -0.039 4.039 6 C -0.156 4.156 7 C -0.113 4.113 8 C -0.094 4.094 9 C -0.515 4.515 10 H 0.063 0.937 11 C -0.146 4.146 12 N -0.517 5.517 13 Si 0.747 3.253 14 H -0.163 1.163 15 H -0.207 1.207 16 H -0.207 1.207 17 H 0.094 0.906 18 H 0.091 0.909 19 H 0.085 0.915 20 H 0.097 0.903 21 H 0.122 0.878 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.448 8.837 -1.622 11.058 hybrid contribution -0.295 -0.895 -0.502 1.068 sum 6.152 7.942 -2.124 10.268 Atomic orbital electron populations 1.20333 0.87395 1.02235 1.02760 1.22815 0.96990 0.91619 1.04204 1.76388 0.87987 1.23807 1.28237 1.47966 1.04817 1.04635 1.59273 1.21967 0.84244 0.93896 1.03775 1.22125 0.97957 0.84401 1.11072 1.20065 0.91202 0.97583 1.02479 1.18083 0.90189 0.93740 1.07418 1.18115 1.17266 0.92671 1.23447 0.93693 1.26063 0.93283 0.95059 1.00213 1.69923 1.16386 1.28144 1.37221 0.86371 0.79641 0.79437 0.79866 1.16316 1.20653 1.20693 0.90568 0.90935 0.91457 0.90259 0.87845 0.89331 0.90964 0.89717 0.91698 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.08 8.88 71.24 0.63 -2.45 15 2 C 0.01 0.39 6.23 43.69 0.27 0.66 15 3 N -0.34 -16.01 12.47 -46.35 -0.58 -16.58 15 4 N -0.38 -15.79 3.98 -353.08 -1.41 -17.19 15 5 C 0.10 2.71 11.06 127.77 1.41 4.13 15 6 C -0.03 -1.35 7.06 42.40 0.30 -1.05 15 7 C -0.05 -1.93 9.71 71.23 0.69 -1.24 15 8 C -0.08 -4.46 4.69 -21.30 -0.10 -4.56 15 9 C -0.48 -28.01 9.31 23.45 0.22 -27.79 15 10 H 0.04 2.83 8.06 -2.91 -0.02 2.80 15 11 C 0.06 3.48 4.51 85.16 0.38 3.87 15 12 N -0.88 -51.47 13.94 21.79 0.30 -51.17 15 13 Si 0.92 44.66 24.75 68.60 1.70 46.36 15 14 H -0.24 -10.62 5.77 99.48 0.57 -10.05 15 15 H -0.28 -14.35 7.11 99.48 0.71 -13.64 15 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 17 H 0.08 3.13 8.14 -2.39 -0.02 3.11 15 18 H 0.07 2.87 8.14 -2.39 -0.02 2.85 15 19 H 0.07 3.20 3.62 -2.38 -0.01 3.19 15 20 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.10 2.17 7.65 -2.39 -0.02 2.15 15 22 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.08 2.26 7.72 -2.39 -0.02 2.24 15 25 H 0.06 2.45 7.98 -2.39 -0.02 2.43 15 26 H 0.28 14.87 8.30 -92.71 -0.77 14.10 15 Total: -1.00 -68.68 220.59 4.86 -63.82 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 1.03 Total: 3.20 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 3.81 Total: -28.43 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.68 Total: -84.95 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.70 Total: 46.36 kcal Total: -68.68 4.86 -63.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368313.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.855 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds