Wall clock time and date at job start Mon Mar 30 2020 01:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35316 * 116.99947 * 2 1 4 4 N 1.32577 * 118.89274 * 180.02562 * 3 2 1 5 5 C 1.31840 * 121.03374 * 179.97438 * 4 3 2 6 6 C 1.41144 * 118.84596 * 0.27292 * 5 4 3 7 7 C 1.41319 * 120.98826 * 179.69895 * 6 5 4 8 8 H 1.07996 * 119.99608 * 23.23109 * 7 6 5 9 9 C 1.39896 * 120.00060 * 203.22876 * 7 6 5 10 10 N 1.30876 * 120.00038 * 17.16278 * 9 7 6 11 11 Si 1.86798 * 119.99948 * 197.16993 * 9 7 6 12 12 H 1.48492 * 109.47418 * 89.99878 * 11 9 7 13 13 H 1.48507 * 109.47151 * 210.00028 * 11 9 7 14 14 H 1.48500 * 109.47029 * 329.99483 * 11 9 7 15 15 C 1.41149 * 118.02267 * 359.46510 * 6 5 4 16 16 N 1.31836 * 118.84929 * 0.53601 * 15 6 5 17 17 H 1.08998 * 109.46920 * 300.00151 * 1 2 3 18 18 H 1.09002 * 109.46957 * 60.00130 * 1 2 3 19 19 H 1.09001 * 109.46815 * 179.97438 * 1 2 3 20 20 H 1.08000 * 120.57812 * 179.97438 * 5 4 3 21 21 H 0.97002 * 119.99907 * 179.97438 * 10 9 7 22 22 H 1.07997 * 120.57356 * 180.23610 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2057 0.0000 4 7 3.3684 1.2495 -0.0005 5 6 4.0104 2.4010 -0.0010 6 6 3.2621 3.5978 0.0048 7 6 3.9037 4.8569 0.0109 8 1 4.9146 4.9496 -0.3577 9 6 3.2293 5.9833 0.4943 10 7 2.1623 5.8380 1.2381 11 14 3.8516 7.6946 0.0779 12 1 3.2147 8.1605 -1.1800 13 1 3.5093 8.6279 1.1812 14 1 5.3256 7.6560 -0.0983 15 6 1.8541 3.4996 -0.0006 16 7 1.2998 2.3034 -0.0001 17 1 -0.3633 0.5139 0.8900 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 5.0900 2.4281 -0.0011 21 1 1.6949 6.6190 1.5736 22 1 1.2414 4.3890 -0.0003 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368737.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:33 Heat of formation + Delta-G solvation = -21.640327 kcal Electronic energy + Delta-G solvation = -10268.747836 eV Core-core repulsion = 8209.361616 eV Total energy + Delta-G solvation = -2059.386220 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.30617 -38.78084 -35.95102 -34.09976 -32.09555 -28.58763 -26.97088 -24.80154 -23.54083 -19.50835 -19.31165 -18.26317 -16.95645 -16.82807 -15.55875 -15.16596 -15.04522 -14.51093 -13.91082 -13.65319 -13.11058 -12.85810 -12.64037 -12.21387 -11.94067 -11.48013 -11.39069 -11.14306 -9.82869 -9.53260 -8.80464 -6.46151 0.61768 0.70979 1.44248 1.54748 1.59115 2.17187 2.22700 2.65543 3.55693 3.79100 4.29097 4.41617 4.48162 4.57348 4.74927 4.87131 5.12155 5.40183 5.58129 6.16760 6.22830 6.40119 6.65072 6.93215 7.71259 8.17176 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.090262 B = 0.011624 C = 0.010563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.134497 B = 2408.224564 C = 2650.080106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.326 6.326 3 C 0.321 3.679 4 N -0.516 5.516 5 C 0.035 3.965 6 C -0.030 4.030 7 C -0.454 4.454 8 H 0.101 0.899 9 C 0.034 3.966 10 N -0.818 5.818 11 Si 0.997 3.003 12 H -0.261 1.261 13 H -0.269 1.269 14 H -0.252 1.252 15 C 0.082 3.918 16 N -0.548 5.548 17 H 0.043 0.957 18 H 0.047 0.953 19 H 0.129 0.871 20 H 0.173 0.827 21 H 0.298 0.702 22 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 1.781 -1.586 2.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.232 6.232 3 C 0.022 3.978 4 N -0.239 5.239 5 C -0.133 4.133 6 C -0.036 4.036 7 C -0.483 4.483 8 H 0.119 0.881 9 C -0.183 4.183 10 N -0.443 5.443 11 Si 0.817 3.183 12 H -0.186 1.186 13 H -0.194 1.194 14 H -0.175 1.175 15 C -0.088 4.088 16 N -0.274 5.274 17 H 0.062 0.938 18 H 0.065 0.935 19 H 0.147 0.853 20 H 0.190 0.810 21 H 0.109 0.891 22 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.414 0.645 -1.435 2.115 hybrid contribution 0.197 1.500 0.079 1.515 sum -1.217 2.145 -1.356 2.814 Atomic orbital electron populations 1.22882 0.76011 1.04024 1.01317 1.85787 1.23525 1.23492 1.90386 1.20225 0.86417 0.84690 1.06497 1.66860 1.08040 1.32249 1.16734 1.23207 0.99821 0.85679 1.04557 1.19470 0.94200 0.95852 0.94115 1.19799 1.02000 0.91160 1.35355 0.88126 1.26978 0.94037 1.06087 0.91209 1.69777 1.16720 1.35377 1.22420 0.84950 0.80099 0.74338 0.78923 1.18559 1.19382 1.17510 1.23217 0.93649 0.92352 0.99570 1.67483 1.42175 0.99811 1.17948 0.93817 0.93458 0.85287 0.81025 0.89075 0.82295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.86 10.35 113.37 1.17 3.04 14 2 O -0.33 -15.19 10.55 -86.03 -0.91 -16.10 14 3 C 0.32 16.92 8.48 180.41 1.53 18.45 14 4 N -0.52 -27.29 10.44 -311.39 -3.25 -30.54 14 5 C 0.04 1.77 11.11 85.41 0.95 2.72 14 6 C -0.03 -1.55 5.61 -21.09 -0.12 -1.67 14 7 C -0.45 -21.94 9.10 23.43 0.21 -21.72 14 8 H 0.10 4.47 7.90 -2.91 -0.02 4.45 14 9 C 0.03 1.52 5.19 85.24 0.44 1.97 14 10 N -0.82 -39.05 10.91 21.82 0.24 -38.81 14 11 Si 1.00 33.70 29.59 68.60 2.03 35.73 14 12 H -0.26 -8.63 7.11 99.48 0.71 -7.92 14 13 H -0.27 -8.77 7.11 99.48 0.71 -8.06 14 14 H -0.25 -8.16 7.11 99.48 0.71 -7.46 14 15 C 0.08 4.38 10.00 85.41 0.85 5.23 14 16 N -0.55 -28.89 9.16 -311.39 -2.85 -31.74 14 17 H 0.04 1.55 8.08 -2.39 -0.02 1.53 14 18 H 0.05 1.64 8.08 -2.39 -0.02 1.62 14 19 H 0.13 3.25 8.14 -2.39 -0.02 3.23 14 20 H 0.17 7.39 8.06 -2.91 -0.02 7.37 14 21 H 0.30 12.70 8.30 -92.71 -0.77 11.93 14 22 H 0.16 8.44 6.18 -2.91 -0.02 8.42 14 Total: -1.00 -59.86 206.55 1.53 -58.33 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.23 Total: 15.12 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.04 Total: 8.01 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -5.86 Total: -101.09 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.91 Total: -16.10 kcal Atomic # 14 Polarization: 33.70 SS G_CDS: 2.03 Total: 35.73 kcal Total: -59.86 1.53 -58.33 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368737.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.688 kcal (2) G-P(sol) polarization free energy of solvation -59.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds