Wall clock time and date at job start Mon Mar 30 2020 02:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47294 * 2 1 4 4 C 1.34508 * 125.67328 * 125.27932 * 3 2 1 5 5 C 1.39278 * 107.18535 * 180.11514 * 4 3 2 6 6 C 1.41595 * 126.55608 * 179.89215 * 5 4 3 7 7 H 1.08009 * 120.00125 * 179.40808 * 6 5 4 8 8 C 1.39692 * 120.00234 * 359.68536 * 6 5 4 9 9 N 1.31030 * 119.99937 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00325 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47057 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 120.00050 * 10 8 6 13 13 H 1.48508 * 109.47034 * 240.00042 * 10 8 6 14 14 C 1.41884 * 106.88716 * 359.63097 * 5 4 3 15 15 C 1.50704 * 125.97812 * 180.26511 * 14 5 4 16 16 N 1.30318 * 108.04679 * 0.22639 * 14 5 4 17 17 H 1.08999 * 109.47123 * 59.99436 * 1 2 3 18 18 H 1.08994 * 109.47420 * 180.02562 * 1 2 3 19 19 H 1.09009 * 109.46761 * 300.00300 * 1 2 3 20 20 H 1.09004 * 109.47183 * 239.99882 * 2 1 3 21 21 H 1.08999 * 109.47123 * 120.00564 * 2 1 3 22 22 H 1.08000 * 126.40869 * 0.02562 * 4 3 2 23 23 H 0.96996 * 119.99923 * 179.97438 * 9 8 6 24 24 H 1.08998 * 109.47145 * 89.99363 * 15 14 5 25 25 H 1.08991 * 109.46930 * 209.99676 * 15 14 5 26 26 H 1.09003 * 109.46908 * 329.99979 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8748 1.9103 0.8920 5 6 3.0726 3.2414 0.5330 6 6 3.8989 4.1802 1.1971 7 1 3.9821 5.1886 0.8194 8 6 4.6109 3.8004 2.3373 9 7 4.5146 2.5754 2.7921 10 14 5.7004 5.0391 3.2138 11 1 5.6370 6.3427 2.5054 12 1 5.2290 5.2113 4.6115 13 1 7.1018 4.5478 3.2211 14 6 2.2926 3.4752 -0.6289 15 6 2.1948 4.7766 -1.3825 16 7 1.6762 2.3674 -0.9310 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.8934 -0.5139 -0.8900 21 1 1.8933 -0.5139 0.8899 22 1 3.3239 1.3991 1.7307 23 1 5.0093 2.3116 3.5837 24 1 2.9647 4.8088 -2.1534 25 1 1.2120 4.8544 -1.8471 26 1 2.3372 5.6079 -0.6920 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370201.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:21 Heat of formation + Delta-G solvation = 38.006166 kcal Electronic energy + Delta-G solvation = -10566.558260 eV Core-core repulsion = 8645.591600 eV Total energy + Delta-G solvation = -1920.966660 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.15498 -35.75981 -34.80769 -31.82440 -30.52123 -28.33212 -26.55797 -23.55297 -21.59295 -19.85695 -18.66911 -17.29373 -16.12216 -15.92626 -14.95796 -14.55890 -14.37815 -13.79127 -13.60338 -13.25729 -12.97519 -12.84586 -12.67911 -12.52987 -12.15056 -12.08268 -11.56912 -11.12373 -10.72876 -9.50635 -9.01792 -8.31969 -5.97636 1.39321 1.45617 1.57580 1.59831 2.22910 2.34120 2.41047 3.57269 3.92358 4.22153 4.36871 4.51946 4.60288 4.78687 4.91714 4.97260 5.06642 5.18015 5.23964 5.39879 5.70515 5.91090 6.09059 6.52538 6.96814 7.16835 7.20969 7.54731 8.70675 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.050765 B = 0.013740 C = 0.011122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.426851 B = 2037.404935 C = 2516.830540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 N -0.392 5.392 4 C -0.067 4.067 5 C -0.085 4.085 6 C -0.455 4.455 7 H 0.071 0.929 8 C 0.008 3.992 9 N -0.875 5.875 10 Si 0.987 3.013 11 H -0.261 1.261 12 H -0.274 1.274 13 H -0.274 1.274 14 C -0.012 4.012 15 C -0.044 4.044 16 N -0.342 5.342 17 H 0.051 0.949 18 H 0.102 0.898 19 H 0.041 0.959 20 H 0.078 0.922 21 H 0.097 0.903 22 H 0.182 0.818 23 H 0.275 0.725 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 -1.914 -1.791 3.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.009 3.991 3 N -0.181 5.181 4 C -0.210 4.210 5 C -0.095 4.095 6 C -0.490 4.490 7 H 0.090 0.910 8 C -0.197 4.197 9 N -0.508 5.508 10 Si 0.810 3.190 11 H -0.184 1.184 12 H -0.200 1.200 13 H -0.200 1.200 14 C -0.178 4.178 15 C -0.103 4.103 16 N -0.168 5.168 17 H 0.070 0.930 18 H 0.121 0.879 19 H 0.060 0.940 20 H 0.096 0.904 21 H 0.115 0.885 22 H 0.198 0.802 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.488 -2.720 -2.390 5.027 hybrid contribution 1.114 0.612 1.149 1.714 sum -2.374 -2.108 -1.240 3.408 Atomic orbital electron populations 1.21952 0.93525 1.03518 1.01618 1.21651 0.96286 0.77790 1.03366 1.48170 1.37931 1.09750 1.22245 1.23880 1.01332 0.96290 0.99526 1.18492 1.01082 0.93873 0.96064 1.19086 1.23350 0.97366 1.09191 0.91049 1.26437 0.98133 0.97591 0.97554 1.69537 1.39477 1.19231 1.22569 0.85055 0.77521 0.78620 0.77806 1.18433 1.19968 1.19979 1.22924 1.00257 0.95912 0.98664 1.19892 1.01897 0.90241 0.98251 1.76154 1.26355 0.98155 1.16109 0.92996 0.87913 0.93955 0.90391 0.88484 0.80184 0.91504 0.91146 0.91113 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 10.09 71.98 0.73 -3.71 15 2 C 0.13 4.60 7.20 86.38 0.62 5.22 15 3 N -0.39 -19.00 3.65 -345.02 -1.26 -20.26 15 4 C -0.07 -3.72 10.41 84.53 0.88 -2.84 15 5 C -0.09 -4.89 5.94 -21.30 -0.13 -5.02 15 6 C -0.46 -25.81 9.15 23.45 0.21 -25.59 15 7 H 0.07 3.85 7.37 -2.91 -0.02 3.83 15 8 C 0.01 0.42 5.49 85.16 0.47 0.89 15 9 N -0.87 -47.98 10.33 21.79 0.23 -47.76 15 10 Si 0.99 41.31 29.56 68.60 2.03 43.34 15 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 15 12 H -0.27 -11.12 7.11 99.48 0.71 -10.42 15 13 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 14 C -0.01 -0.61 7.28 43.69 0.32 -0.29 15 15 C -0.04 -1.78 10.24 71.24 0.73 -1.05 15 16 N -0.34 -17.26 12.30 -46.35 -0.57 -17.83 15 17 H 0.05 1.68 8.14 -2.39 -0.02 1.66 15 18 H 0.10 2.18 8.14 -2.39 -0.02 2.16 15 19 H 0.04 1.37 8.14 -2.38 -0.02 1.35 15 20 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 21 H 0.10 3.10 8.06 -2.39 -0.02 3.08 15 22 H 0.18 10.20 5.75 -2.91 -0.02 10.19 15 23 H 0.27 13.81 8.30 -92.71 -0.77 13.04 15 24 H 0.07 2.60 8.14 -2.39 -0.02 2.58 15 25 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 26 H 0.07 2.74 7.62 -2.39 -0.02 2.72 15 Total: -1.00 -65.43 228.92 5.41 -60.01 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.16 Total: 14.90 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 3.83 Total: -32.39 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.61 Total: -85.85 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -65.43 5.41 -60.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370201.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.020 kcal (2) G-P(sol) polarization free energy of solvation -65.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds