Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00162 * 2 1 4 4 H 1.48499 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46944 * 299.99702 * 3 2 1 6 6 H 1.48496 * 109.47676 * 59.99678 * 3 2 1 7 7 C 1.37878 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99873 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47003 * 179.97438 * 11 10 9 13 13 C 1.34845 * 125.88833 * 95.00203 * 12 11 10 14 14 C 1.40883 * 107.41891 * 180.02562 * 13 12 11 15 15 C 1.34854 * 107.41814 * 0.02562 * 14 13 12 16 16 N 1.36343 * 108.21624 * 0.26031 * 15 14 13 17 17 H 0.96994 * 125.63652 * 179.73195 * 16 15 14 18 18 H 0.97004 * 119.99638 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46902 * 59.99679 * 9 7 2 20 20 H 1.08992 * 109.46896 * 299.99572 * 9 7 2 21 21 H 1.00907 * 110.99864 * 56.04697 * 10 9 7 22 22 H 1.08999 * 109.46652 * 60.00532 * 11 10 9 23 23 H 1.08998 * 109.47052 * 300.00251 * 11 10 9 24 24 H 1.08010 * 126.29114 * 0.04613 * 13 12 11 25 25 H 1.08008 * 126.29481 * 179.97438 * 14 13 12 26 26 H 1.08002 * 125.89007 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5147 -6.0260 0.0005 13 6 2.9743 -6.6767 1.0885 14 6 3.8984 -7.6424 0.6433 15 6 3.9688 -7.5448 -0.6998 16 7 3.1263 -6.5502 -1.0996 17 1 2.9835 -6.2646 -2.0155 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8903 21 1 2.8404 -3.5487 0.7820 22 1 0.8801 -4.9817 -0.8887 23 1 0.8806 -4.9812 0.8913 24 1 2.6865 -6.4917 2.1130 25 1 4.4499 -8.3334 1.2638 26 1 4.5894 -8.1471 -1.3467 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048436901.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = 37.913395 kcal Electronic energy + Delta-G solvation = -10070.359596 eV Core-core repulsion = 8149.388914 eV Total energy + Delta-G solvation = -1920.970682 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.72580 -35.26208 -32.51050 -30.59173 -29.51111 -26.48813 -23.76908 -21.40830 -20.31056 -19.79424 -17.40560 -16.15369 -14.76686 -14.50881 -14.02789 -13.37700 -13.05710 -12.84802 -12.71919 -11.98396 -11.92442 -11.29314 -10.99817 -10.74002 -10.63657 -9.96755 -9.21369 -8.56838 -8.50547 -7.78511 -7.32162 -6.04954 -4.06962 2.57259 3.29116 3.30436 3.37663 3.43352 3.66456 4.42827 5.28526 5.31132 5.37984 5.53214 5.73709 5.81882 6.06703 6.15890 6.50184 6.60274 7.17425 7.31479 7.38520 7.45365 7.76056 7.89930 8.09553 8.36498 8.57255 9.02545 9.58149 11.06170 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.091044 B = 0.007642 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.471029 B = 3662.948971 C = 3769.776566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.688 5.688 11 C 0.119 3.881 12 C 0.041 3.959 13 C -0.207 4.207 14 C -0.204 4.204 15 C -0.027 4.027 16 N -0.548 5.548 17 H 0.413 0.587 18 H 0.261 0.739 19 H 0.028 0.972 20 H -0.011 1.011 21 H 0.334 0.666 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.805 -11.543 -0.732 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.319 5.319 11 C -0.011 4.011 12 C -0.073 4.073 13 C -0.232 4.232 14 C -0.229 4.229 15 C -0.158 4.158 16 N -0.142 5.142 17 H 0.250 0.750 18 H 0.071 0.929 19 H 0.046 0.954 20 H 0.007 0.993 21 H 0.150 0.850 22 H 0.087 0.913 23 H 0.061 0.939 24 H 0.148 0.852 25 H 0.147 0.853 26 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.700 -11.353 -1.569 12.387 hybrid contribution 0.033 0.980 0.495 1.099 sum 4.733 -10.373 -1.074 11.452 Atomic orbital electron populations 1.69976 1.06089 1.26723 1.50975 1.24995 0.94891 0.99411 0.95305 0.86412 0.80075 0.83241 0.77511 1.19636 1.21009 1.21036 1.21218 0.93586 0.90162 1.50271 0.91886 1.19595 0.90627 0.87333 0.95894 1.60755 1.21098 1.00558 1.49492 1.20393 0.92336 0.87419 1.00931 1.20537 1.00958 0.99431 0.86358 1.20681 1.03566 1.01319 0.97643 1.20811 1.04483 1.03681 0.93928 1.21724 1.00838 0.97017 0.96225 1.41958 1.34315 1.28895 1.09013 0.75041 0.92938 0.95426 0.99334 0.84953 0.91273 0.93863 0.85210 0.85277 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 7 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 15 8 H 0.06 1.79 7.81 -52.48 -0.41 1.38 15 9 C 0.19 5.07 5.44 -4.97 -0.03 5.04 15 10 N -0.69 -15.07 6.48 -116.34 -0.75 -15.82 15 11 C 0.12 2.18 6.22 -4.97 -0.03 2.15 15 12 C 0.04 0.68 6.68 -81.79 -0.55 0.14 15 13 C -0.21 -3.30 10.76 -39.79 -0.43 -3.72 15 14 C -0.20 -2.89 10.86 -39.78 -0.43 -3.32 15 15 C -0.03 -0.35 11.94 -16.75 -0.20 -0.55 15 16 N -0.55 -7.80 6.08 -9.12 -0.06 -7.86 15 17 H 0.41 5.05 8.96 -40.82 -0.37 4.68 15 18 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 19 H 0.03 0.78 8.14 -51.93 -0.42 0.35 15 20 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 15 21 H 0.33 7.21 8.71 -39.29 -0.34 6.87 15 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.13 1.93 8.06 -52.48 -0.42 1.51 15 25 H 0.13 1.54 8.06 -52.48 -0.42 1.12 15 26 H 0.16 1.50 8.06 -52.49 -0.42 1.08 15 LS Contribution 233.92 15.07 3.53 3.53 Total: -1.00 -30.92 233.92 -6.86 -37.79 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.21 Total: 5.56 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.08 Total: -13.80 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.07 Total: -49.86 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.92 -6.86 -37.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048436901.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.701 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds