Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00162 * 2 1 4 4 H 1.48499 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46944 * 299.99702 * 3 2 1 6 6 H 1.48496 * 109.47676 * 59.99678 * 3 2 1 7 7 C 1.37878 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99873 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47003 * 179.97438 * 11 10 9 13 13 C 1.34845 * 125.88833 * 95.00203 * 12 11 10 14 14 C 1.40883 * 107.41891 * 180.02562 * 13 12 11 15 15 C 1.34854 * 107.41814 * 0.02562 * 14 13 12 16 16 N 1.36343 * 108.21624 * 0.26031 * 15 14 13 17 17 H 0.96994 * 125.63652 * 179.73195 * 16 15 14 18 18 H 0.97004 * 119.99638 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46902 * 59.99679 * 9 7 2 20 20 H 1.08992 * 109.46896 * 299.99572 * 9 7 2 21 21 H 1.00907 * 110.99864 * 56.04697 * 10 9 7 22 22 H 1.08999 * 109.46652 * 60.00532 * 11 10 9 23 23 H 1.08998 * 109.47052 * 300.00251 * 11 10 9 24 24 H 1.08010 * 126.29114 * 0.04613 * 13 12 11 25 25 H 1.08008 * 126.29481 * 179.97438 * 14 13 12 26 26 H 1.08002 * 125.89007 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5147 -6.0260 0.0005 13 6 2.9743 -6.6767 1.0885 14 6 3.8984 -7.6424 0.6433 15 6 3.9688 -7.5448 -0.6998 16 7 3.1263 -6.5502 -1.0996 17 1 2.9835 -6.2646 -2.0155 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8903 21 1 2.8404 -3.5487 0.7820 22 1 0.8801 -4.9817 -0.8887 23 1 0.8806 -4.9812 0.8913 24 1 2.6865 -6.4917 2.1130 25 1 4.4499 -8.3334 1.2638 26 1 4.5894 -8.1471 -1.3467 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048436901.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = 15.904287 kcal Electronic energy + Delta-G solvation = -10071.313983 eV Core-core repulsion = 8149.388914 eV Total energy + Delta-G solvation = -1921.925069 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.86768 -37.07882 -34.59850 -31.72034 -31.08622 -28.30165 -25.42484 -23.40442 -21.41025 -20.97813 -18.98521 -17.98389 -16.70765 -16.19284 -15.54419 -14.83425 -14.45604 -14.39552 -14.09663 -13.71923 -13.28616 -13.04691 -12.73130 -12.63979 -12.34104 -11.97843 -11.33512 -10.68747 -9.70118 -9.24688 -8.88346 -8.24057 -6.35650 1.39200 1.41338 1.42142 1.55907 2.14743 2.39832 2.57759 3.09147 3.70139 4.10260 4.34226 4.50488 4.59467 4.69890 4.89400 5.04952 5.22428 5.40519 5.45457 5.58785 5.97878 6.15262 6.27766 6.39784 6.64950 6.84165 6.85898 7.35371 8.87446 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.091044 B = 0.007642 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.471029 B = 3662.948971 C = 3769.776566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.206 3.794 10 N -0.684 5.684 11 C 0.125 3.875 12 C 0.013 3.987 13 C -0.215 4.215 14 C -0.223 4.223 15 C -0.009 4.009 16 N -0.547 5.547 17 H 0.422 0.578 18 H 0.266 0.734 19 H 0.004 0.996 20 H -0.035 1.035 21 H 0.335 0.665 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.131 0.869 25 H 0.151 0.849 26 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.359 -11.956 -1.098 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.078 3.922 10 N -0.315 5.315 11 C -0.005 4.005 12 C -0.101 4.101 13 C -0.241 4.241 14 C -0.247 4.247 15 C -0.141 4.141 16 N -0.142 5.142 17 H 0.259 0.741 18 H 0.075 0.925 19 H 0.022 0.978 20 H -0.017 1.017 21 H 0.152 0.848 22 H 0.088 0.912 23 H 0.060 0.940 24 H 0.149 0.851 25 H 0.169 0.831 26 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.257 -11.786 -1.942 13.484 hybrid contribution -0.445 0.999 0.605 1.250 sum 5.812 -10.786 -1.337 12.325 Atomic orbital electron populations 1.70094 1.07771 1.28028 1.51450 1.25951 0.95810 1.03379 0.94486 0.85257 0.78846 0.78190 0.77824 1.18790 1.20277 1.20204 1.21551 0.93757 0.91421 1.50751 0.91927 1.19258 0.90650 0.88702 0.93566 1.60646 1.20345 1.00977 1.49531 1.20303 0.92882 0.86418 1.00874 1.20194 1.02244 1.00035 0.87654 1.20935 1.03795 1.01691 0.97688 1.21152 1.04678 1.04003 0.94903 1.22405 0.99380 0.95741 0.96528 1.42028 1.34149 1.28997 1.08995 0.74066 0.92528 0.97785 1.01748 0.84761 0.91238 0.94005 0.85124 0.83136 0.78498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.24 15 2 C 0.00 0.12 5.46 84.65 0.46 0.58 15 3 Si 0.97 44.51 29.54 68.60 2.03 46.53 15 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 7 C -0.54 -31.02 9.32 25.60 0.24 -30.79 15 8 H 0.06 3.55 7.81 -2.91 -0.02 3.52 15 9 C 0.21 11.18 5.44 85.56 0.47 11.64 15 10 N -0.68 -30.37 6.48 -521.98 -3.38 -33.75 15 11 C 0.12 4.62 6.22 85.56 0.53 5.15 15 12 C 0.01 0.40 6.68 41.08 0.27 0.68 15 13 C -0.22 -6.62 10.76 22.14 0.24 -6.39 15 14 C -0.22 -5.76 10.86 22.14 0.24 -5.52 15 15 C -0.01 -0.20 11.94 83.21 0.99 0.79 15 16 N -0.55 -14.52 6.08 -182.76 -1.11 -15.63 15 17 H 0.42 9.54 8.96 -92.71 -0.83 8.71 15 18 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 19 H 0.00 0.24 8.14 -2.39 -0.02 0.22 15 20 H -0.04 -2.04 8.14 -2.39 -0.02 -2.06 15 21 H 0.34 14.63 8.71 -89.69 -0.78 13.85 15 22 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 24 H 0.13 3.84 8.06 -2.91 -0.02 3.82 15 25 H 0.15 3.14 8.06 -2.91 -0.02 3.12 15 26 H 0.20 2.82 8.06 -2.91 -0.02 2.79 15 Total: -1.00 -65.51 233.92 0.83 -64.68 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.43 Total: 18.25 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 3.44 Total: -23.84 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -4.21 Total: -105.62 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.51 0.83 -64.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048436901.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.584 kcal (2) G-P(sol) polarization free energy of solvation -65.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds