Wall clock time and date at job start Mon Mar 30 2020 02:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00209 * 3 2 1 5 5 H 1.48500 * 109.46628 * 29.99896 * 3 2 1 6 6 H 1.48493 * 109.47109 * 149.99555 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34944 * 126.03372 * 125.00124 * 12 11 10 14 14 C 1.35317 * 107.74658 * 179.97438 * 13 12 11 15 15 C 1.39871 * 107.91935 * 0.02562 * 14 13 12 16 16 N 1.30845 * 108.20108 * 359.74200 * 15 14 13 17 17 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 18 18 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 19 19 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 20 20 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 21 21 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 22 22 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 23 23 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 24 24 H 1.08001 * 126.12891 * 0.02562 * 13 12 11 25 25 H 1.08002 * 126.04160 * 179.97438 * 14 13 12 26 26 H 1.07995 * 125.90070 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 2.4729 -7.1108 0.8934 14 6 3.4923 -7.9294 0.5446 15 6 4.0956 -7.4012 -0.6015 16 7 3.4576 -6.3077 -0.9321 17 1 -0.4850 0.8401 -0.0004 18 1 0.6240 -2.5567 -0.8902 19 1 0.6247 -2.5571 0.8897 20 1 2.8719 -3.6044 0.8895 21 1 2.8719 -3.6044 -0.8905 22 1 0.8531 -5.0451 -0.8897 23 1 0.8538 -5.0446 0.8903 24 1 1.8101 -7.2427 1.7358 25 1 3.7884 -8.8309 1.0605 26 1 4.9396 -7.8249 -1.1253 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579473.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:05 Heat of formation + Delta-G solvation = 59.975841 kcal Electronic energy + Delta-G solvation = -10072.358650 eV Core-core repulsion = 8152.344667 eV Total energy + Delta-G solvation = -1920.013983 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.80456 -34.95718 -32.76170 -30.63940 -29.64206 -26.62975 -23.56499 -21.03429 -20.67425 -19.86483 -17.02375 -16.08701 -15.06879 -14.48930 -14.14262 -13.77010 -13.23693 -12.58514 -12.37868 -11.94698 -11.56886 -10.91809 -10.89123 -10.59834 -10.35650 -9.81052 -9.58096 -9.25134 -9.05115 -8.39189 -8.29926 -6.04441 -4.06733 2.20663 2.88848 3.07705 3.30966 3.36944 3.41053 4.43520 4.88408 5.04971 5.31789 5.40470 5.62817 5.77713 5.87062 5.98552 6.19599 6.50814 6.63919 6.87335 7.01364 7.34812 7.58632 7.70044 7.94066 8.00711 8.36678 8.99317 9.57673 11.06990 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.095371 B = 0.007576 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.521361 B = 3694.876005 C = 3863.406590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.119 4.119 11 C 0.126 3.874 12 N -0.358 5.358 13 C 0.049 3.951 14 C -0.287 4.287 15 C 0.030 3.970 16 N -0.291 5.291 17 H 0.261 0.739 18 H 0.019 0.981 19 H 0.018 0.982 20 H 0.052 0.948 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.170 0.830 25 H 0.141 0.859 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 -12.185 1.800 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.157 4.157 11 C 0.006 3.994 12 N -0.140 5.140 13 C -0.099 4.099 14 C -0.317 4.317 15 C -0.156 4.156 16 N -0.113 5.113 17 H 0.071 0.929 18 H 0.038 0.962 19 H 0.036 0.964 20 H 0.071 0.929 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.110 0.890 24 H 0.187 0.813 25 H 0.159 0.841 26 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.181 -10.968 0.975 11.462 hybrid contribution 0.443 0.212 0.669 0.830 sum 3.624 -10.756 1.644 11.469 Atomic orbital electron populations 1.69957 1.06059 1.26723 1.50790 1.25018 0.94875 0.99327 0.95192 0.86557 0.79833 0.83250 0.78180 1.20586 1.21182 1.19848 1.21192 0.93107 0.90822 1.50738 0.92606 1.19068 0.93807 0.91103 0.97446 1.21946 0.99684 0.92176 1.01916 1.22153 0.89407 0.84504 1.03289 1.49126 1.25070 1.19811 1.19978 1.22591 1.00552 0.90264 0.96487 1.21422 1.02313 1.05171 1.02839 1.23821 1.00414 0.94128 0.97207 1.77384 1.01378 1.18724 1.13805 0.92931 0.96220 0.96397 0.92906 0.91752 0.90008 0.88990 0.81302 0.84105 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 15 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 15 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 15 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 15 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 15 10 C -0.12 -2.51 5.34 -26.73 -0.14 -2.66 15 11 C 0.13 2.17 6.51 -4.04 -0.03 2.14 15 12 N -0.36 -6.06 3.68 -61.36 -0.23 -6.29 15 13 C 0.05 0.68 11.45 -17.22 -0.20 0.48 15 14 C -0.29 -3.78 10.80 -40.01 -0.43 -4.21 15 15 C 0.03 0.43 12.03 -17.36 -0.21 0.22 15 16 N -0.29 -5.23 12.42 30.63 0.38 -4.85 15 17 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 18 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 19 H 0.02 0.47 8.14 -51.93 -0.42 0.04 15 20 H 0.05 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.06 1.44 8.14 -51.93 -0.42 1.02 15 22 H 0.08 1.38 8.14 -51.93 -0.42 0.95 15 23 H 0.09 1.36 8.07 -51.93 -0.42 0.94 15 24 H 0.17 1.73 8.06 -52.49 -0.42 1.30 15 25 H 0.14 1.43 8.06 -52.49 -0.42 1.01 15 26 H 0.18 1.92 8.06 -52.49 -0.42 1.50 15 LS Contribution 234.92 15.07 3.54 3.54 Total: -1.00 -31.75 234.92 -5.49 -37.24 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -3.34 Total: -3.20 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -1.56 Total: -17.18 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.89 Total: -37.17 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.75 -5.49 -37.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579473.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.211 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds