Wall clock time and date at job start Mon Mar 30 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40213 * 119.71588 * 2 1 4 4 C 1.36316 * 119.76109 * 180.02562 * 3 2 1 5 5 C 1.40829 * 119.24818 * 359.97438 * 4 3 2 6 6 O 1.22018 * 120.27269 * 179.97438 * 5 4 3 7 7 N 1.34831 * 119.45025 * 359.97438 * 5 4 3 8 8 C 1.36608 * 119.90803 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00314 * 0.02562 * 8 7 5 10 10 C 1.39364 * 119.99801 * 179.72826 * 8 7 5 11 11 N 1.31054 * 119.99993 * 0.27871 * 10 8 7 12 12 Si 1.86803 * 119.99859 * 180.28049 * 10 8 7 13 13 H 1.48498 * 109.47174 * 89.99979 * 12 10 8 14 14 H 1.48501 * 109.47062 * 209.99930 * 12 10 8 15 15 H 1.48499 * 109.46981 * 330.00083 * 12 10 8 16 16 N 1.30783 * 119.71835 * 180.28730 * 2 1 3 17 17 H 1.08999 * 109.47278 * 90.00853 * 1 2 3 18 18 H 1.09003 * 109.47385 * 210.00286 * 1 2 3 19 19 H 1.08999 * 109.47499 * 330.00487 * 1 2 3 20 20 H 1.07993 * 120.12072 * 359.97438 * 3 2 1 21 21 H 1.07998 * 120.37753 * 180.02562 * 4 3 2 22 22 H 0.97000 * 119.99310 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.2177 0.0000 4 6 3.5652 1.2188 -0.0005 5 6 4.2542 -0.0094 -0.0005 6 8 5.4742 -0.0302 -0.0015 7 7 3.5546 -1.1620 0.0005 8 6 4.2135 -2.3587 0.0000 9 1 5.2933 -2.3807 -0.0008 10 6 3.4922 -3.5512 0.0068 11 7 2.1820 -3.5245 0.0082 12 14 4.3932 -5.1876 0.0141 13 1 4.6335 -5.6141 1.4160 14 1 3.5690 -6.2095 -0.6799 15 1 5.6933 -5.0399 -0.6882 16 7 2.1553 -1.1358 -0.0057 17 1 -0.3634 -0.0002 -1.0276 18 1 -0.3634 -0.8900 0.5139 19 1 -0.3634 0.8900 0.5137 20 1 1.6594 2.1514 -0.0004 21 1 4.1106 2.1510 -0.0001 22 1 1.6801 -4.3546 0.0133 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061810504.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:44 Heat of formation + Delta-G solvation = 9.363175 kcal Electronic energy + Delta-G solvation = -10514.107808 eV Core-core repulsion = 8456.066001 eV Total energy + Delta-G solvation = -2058.041807 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.43293 -37.84669 -36.33796 -33.77100 -32.35263 -29.60028 -27.20201 -24.72404 -22.93025 -20.47154 -18.44076 -17.33467 -16.87166 -16.40628 -16.24353 -15.16645 -14.31345 -14.15643 -13.73423 -13.51686 -13.21861 -12.94891 -12.77596 -12.49419 -12.12756 -11.57748 -11.35469 -10.62001 -10.19967 -9.49920 -8.57334 -6.34518 0.01296 1.13715 1.35390 1.46231 1.52409 1.93820 2.33067 2.56388 3.20315 3.78266 4.06120 4.35428 4.56777 4.85680 4.97007 5.02368 5.18829 5.26661 5.51791 5.65628 5.85122 6.25079 6.68183 7.39683 7.72839 8.29749 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.048118 B = 0.017654 C = 0.013007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.757896 B = 1585.629924 C = 2152.239029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.002 4.002 3 C -0.112 4.112 4 C -0.226 4.226 5 C 0.369 3.631 6 O -0.665 6.665 7 N -0.209 5.209 8 C -0.324 4.324 9 H 0.113 0.887 10 C 0.003 3.997 11 N -0.773 5.773 12 Si 1.015 2.985 13 H -0.259 1.259 14 H -0.253 1.253 15 H -0.264 1.264 16 N -0.215 5.215 17 H 0.082 0.918 18 H 0.062 0.938 19 H 0.106 0.894 20 H 0.175 0.825 21 H 0.153 0.847 22 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 1.329 0.028 6.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.164 4.164 3 C -0.139 4.139 4 C -0.256 4.256 5 C 0.178 3.822 6 O -0.560 6.560 7 N -0.007 5.007 8 C -0.458 4.458 9 H 0.130 0.870 10 C -0.212 4.212 11 N -0.401 5.401 12 Si 0.833 3.167 13 H -0.183 1.183 14 H -0.177 1.177 15 H -0.188 1.188 16 N -0.042 5.042 17 H 0.100 0.900 18 H 0.081 0.919 19 H 0.124 0.876 20 H 0.193 0.807 21 H 0.170 0.830 22 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.497 0.318 0.021 6.505 hybrid contribution 0.888 0.314 0.000 0.942 sum -5.610 0.633 0.021 5.645 Atomic orbital electron populations 1.20419 0.84316 1.03911 1.03538 1.23152 0.99861 0.89742 1.03672 1.21850 0.93308 0.99597 0.99144 1.22149 0.96068 0.96712 1.10680 1.18190 0.88662 0.86463 0.88862 1.90668 1.14536 1.87543 1.63216 1.46211 1.03647 1.07652 1.43169 1.20675 0.93668 0.82108 1.49387 0.86978 1.26801 0.96521 1.03564 0.94326 1.70215 1.06943 1.30703 1.32254 0.84662 0.78272 0.73998 0.79771 1.18335 1.17670 1.18815 1.76597 0.87759 1.24107 1.15726 0.89963 0.91923 0.87570 0.80734 0.82962 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.85 10.18 71.23 0.73 -1.12 14 2 C 0.00 -0.09 6.90 43.19 0.30 0.21 14 3 C -0.11 -4.26 9.72 22.30 0.22 -4.04 14 4 C -0.23 -10.45 10.01 22.46 0.22 -10.22 14 5 C 0.37 21.61 7.45 84.87 0.63 22.24 14 6 O -0.66 -43.26 16.70 -5.37 -0.09 -43.35 14 7 N -0.21 -12.35 3.62 -315.40 -1.14 -13.49 14 8 C -0.32 -19.05 9.65 84.22 0.81 -18.24 14 9 H 0.11 6.79 7.16 -2.91 -0.02 6.77 14 10 C 0.00 0.17 5.49 85.08 0.47 0.64 14 11 N -0.77 -39.98 11.29 21.72 0.25 -39.74 14 12 Si 1.02 39.04 29.55 68.60 2.03 41.07 14 13 H -0.26 -9.53 7.11 99.48 0.71 -8.83 14 14 H -0.25 -8.82 7.11 99.48 0.71 -8.11 14 15 H -0.26 -10.24 7.11 99.48 0.71 -9.53 14 16 N -0.22 -11.38 8.75 -47.20 -0.41 -11.80 14 17 H 0.08 2.14 8.14 -2.39 -0.02 2.13 14 18 H 0.06 1.96 8.14 -2.39 -0.02 1.94 14 19 H 0.11 2.22 8.09 -2.39 -0.02 2.20 14 20 H 0.18 4.54 8.06 -2.91 -0.02 4.52 14 21 H 0.15 6.13 8.06 -2.91 -0.02 6.11 14 22 H 0.29 13.20 8.30 -92.71 -0.77 12.43 14 Total: -1.00 -73.44 206.57 5.23 -68.21 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.23 Total: 9.63 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 3.38 Total: -10.54 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -1.31 Total: -65.03 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.09 Total: -43.35 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -73.44 5.23 -68.21 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061810504.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.574 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds