Wall clock time and date at job start Mon Mar 30 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39871 * 125.90193 * 2 1 4 4 C 1.35320 * 107.91941 * 180.02562 * 3 2 1 5 5 N 1.34944 * 107.74894 * 0.02562 * 4 3 2 6 6 C 1.46499 * 126.04011 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47391 * 205.00060 * 6 5 4 8 8 C 1.53000 * 109.46840 * 325.00390 * 6 5 4 9 9 C 1.50699 * 109.47060 * 85.00132 * 6 5 4 10 10 H 1.07999 * 120.00019 * 0.02562 * 9 6 5 11 11 C 1.37877 * 120.00129 * 180.02562 * 9 6 5 12 12 N 1.31519 * 119.99723 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99900 * 179.97438 * 11 9 6 14 14 H 1.48491 * 109.47312 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46948 * 119.99892 * 13 11 9 16 16 H 1.48500 * 109.46809 * 239.99811 * 13 11 9 17 17 N 1.30838 * 125.89593 * 180.30497 * 2 1 3 18 18 H 1.09005 * 109.47239 * 89.99548 * 1 2 3 19 19 H 1.08997 * 109.47545 * 209.99727 * 1 2 3 20 20 H 1.09007 * 109.46988 * 329.99604 * 1 2 3 21 21 H 1.07999 * 126.04121 * 359.97438 * 3 2 1 22 22 H 1.08000 * 126.12448 * 180.02562 * 4 3 2 23 23 H 1.09001 * 109.47194 * 299.99493 * 8 6 5 24 24 H 1.08992 * 109.47399 * 59.99666 * 8 6 5 25 25 H 1.09004 * 109.46724 * 180.02562 * 8 6 5 26 26 H 0.97003 * 119.99231 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7152 -0.0006 5 7 3.6087 -0.6342 -0.0015 6 6 4.7898 -1.5010 -0.0029 7 1 4.5314 -2.4665 -0.4377 8 6 5.8995 -0.8494 -0.8305 9 6 5.2690 -1.6993 1.4121 10 1 4.7458 -1.2273 2.2305 11 6 6.3753 -2.4834 1.6618 12 7 7.0121 -3.0585 0.6651 13 14 6.9696 -2.7286 3.4156 14 1 6.0875 -1.9800 4.3465 15 1 6.9329 -4.1743 3.7531 16 1 8.3613 -2.2261 3.5414 17 7 2.2741 -1.0599 -0.0056 18 1 -0.3634 0.0001 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.9924 2.1598 -0.0004 22 1 4.4892 1.3484 -0.0003 23 1 5.5530 -0.7060 -1.8540 24 1 6.1579 0.1161 -0.3957 25 1 6.7781 -1.4945 -0.8319 26 1 7.7907 -3.6098 0.8408 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070685336.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:17 Heat of formation + Delta-G solvation = 44.701923 kcal Electronic energy + Delta-G solvation = -10541.911800 eV Core-core repulsion = 8621.235491 eV Total energy + Delta-G solvation = -1920.676310 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.87871 -36.69490 -34.02870 -31.63750 -30.67648 -27.89094 -27.46141 -23.71820 -21.20968 -20.50420 -18.73102 -17.74924 -16.38916 -15.77026 -15.05478 -14.80510 -14.28227 -14.03829 -13.49920 -13.47605 -13.00598 -12.88209 -12.72924 -12.67078 -12.31583 -12.17592 -11.40544 -11.30823 -10.68122 -10.00310 -9.25607 -8.29745 -6.48878 1.25192 1.36402 1.39031 1.50731 1.98552 2.04416 2.35888 2.97378 3.97072 4.09719 4.49783 4.55547 4.71760 4.75339 4.90267 4.91462 5.00351 5.13660 5.22806 5.41492 5.54022 5.70441 5.93998 6.06398 6.35312 6.65429 7.12357 7.22901 8.73875 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.060205 B = 0.011813 C = 0.010939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.962776 B = 2369.640703 C = 2558.976791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.038 3.962 3 C -0.296 4.296 4 C 0.048 3.952 5 N -0.352 5.352 6 C 0.279 3.721 7 H 0.019 0.981 8 C -0.134 4.134 9 C -0.552 4.552 10 H 0.045 0.955 11 C 0.027 3.973 12 N -0.908 5.908 13 Si 0.971 3.029 14 H -0.276 1.276 15 H -0.276 1.276 16 H -0.266 1.266 17 N -0.358 5.358 18 H 0.086 0.914 19 H 0.063 0.937 20 H 0.099 0.901 21 H 0.172 0.828 22 H 0.184 0.816 23 H 0.035 0.965 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 7.300 -0.661 9.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.126 4.126 3 C -0.325 4.325 4 C -0.101 4.101 5 N -0.132 5.132 6 C 0.179 3.821 7 H 0.037 0.963 8 C -0.193 4.193 9 C -0.591 4.591 10 H 0.064 0.936 11 C -0.174 4.174 12 N -0.546 5.546 13 Si 0.795 3.205 14 H -0.201 1.201 15 H -0.201 1.201 16 H -0.191 1.191 17 N -0.183 5.183 18 H 0.105 0.895 19 H 0.082 0.918 20 H 0.117 0.883 21 H 0.190 0.810 22 H 0.201 0.799 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.063 5.794 -0.720 7.728 hybrid contribution 0.581 0.370 0.750 1.019 sum -4.482 6.164 0.030 7.621 Atomic orbital electron populations 1.20209 0.84319 1.03750 1.03619 1.23064 0.98606 0.90799 1.00140 1.21613 0.90948 1.00407 1.19542 1.22938 1.00609 0.85457 1.01076 1.49397 1.05101 1.05712 1.53028 1.18948 0.78355 0.88091 0.96685 0.96288 1.21940 1.00157 1.00903 0.96275 1.21449 1.13307 1.32471 0.91825 0.93646 1.25648 0.95687 0.94098 1.01959 1.69951 1.20338 1.31822 1.32501 0.85319 0.78374 0.78075 0.78744 1.20099 1.20129 1.19092 1.77166 0.88321 1.25581 1.27245 0.89521 0.91805 0.88256 0.81047 0.79919 0.94563 0.92787 0.89455 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.60 10.45 71.23 0.74 -0.86 15 2 C 0.04 1.48 7.22 43.10 0.31 1.79 15 3 C -0.30 -10.50 10.74 21.99 0.24 -10.26 15 4 C 0.05 1.94 10.59 83.54 0.88 2.82 15 5 N -0.35 -17.23 3.51 -331.06 -1.16 -18.39 15 6 C 0.28 14.85 3.31 44.25 0.15 15.00 15 7 H 0.02 1.14 8.14 -2.39 -0.02 1.12 15 8 C -0.13 -6.24 8.61 71.98 0.62 -5.62 15 9 C -0.55 -31.21 8.84 25.60 0.23 -30.99 15 10 H 0.05 2.67 7.81 -2.91 -0.02 2.65 15 11 C 0.03 1.48 5.30 84.65 0.45 1.93 15 12 N -0.91 -50.16 11.32 21.45 0.24 -49.92 15 13 Si 0.97 43.05 29.54 68.60 2.03 45.07 15 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 15 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 16 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 17 N -0.36 -17.33 12.58 -47.39 -0.60 -17.93 15 18 H 0.09 1.97 8.14 -2.38 -0.02 1.95 15 19 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 20 H 0.10 2.01 8.14 -2.38 -0.02 1.99 15 21 H 0.17 4.60 8.06 -2.91 -0.02 4.57 15 22 H 0.18 6.30 7.26 -2.91 -0.02 6.28 15 23 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 24 H 0.05 2.30 7.16 -2.39 -0.02 2.28 15 25 H 0.09 4.41 6.07 -2.39 -0.01 4.39 15 26 H 0.27 14.03 8.31 -92.71 -0.77 13.26 15 Total: -1.00 -64.26 228.69 5.28 -58.98 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.15 Total: 8.37 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 3.62 Total: -26.19 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -1.51 Total: -86.24 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -64.26 5.28 -58.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070685336.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.682 kcal (2) G-P(sol) polarization free energy of solvation -64.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds