Wall clock time and date at job start Mon Mar 30 2020 02:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39866 * 125.89915 * 2 1 4 4 C 1.35320 * 107.91898 * 179.97438 * 3 2 1 5 5 N 1.34951 * 107.74569 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.03463 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46651 * 155.03042 * 6 5 4 8 8 C 1.52997 * 109.47189 * 35.02674 * 6 5 4 9 9 C 1.50698 * 109.46894 * 275.02592 * 6 5 4 10 10 H 1.08000 * 120.00339 * 359.97438 * 9 6 5 11 11 C 1.37883 * 119.99819 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99737 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 119.99876 * 179.97438 * 11 9 6 14 14 H 1.48508 * 109.47071 * 89.99619 * 13 11 9 15 15 H 1.48496 * 109.47234 * 209.99843 * 13 11 9 16 16 H 1.48502 * 109.47512 * 329.99814 * 13 11 9 17 17 N 1.30844 * 125.89476 * 179.97438 * 2 1 3 18 18 H 1.09006 * 109.47315 * 270.01690 * 1 2 3 19 19 H 1.08994 * 109.47486 * 30.01360 * 1 2 3 20 20 H 1.09006 * 109.47537 * 150.01822 * 1 2 3 21 21 H 1.07993 * 126.04141 * 359.97438 * 3 2 1 22 22 H 1.07996 * 126.12765 * 180.02562 * 4 3 2 23 23 H 1.08998 * 109.47038 * 59.99763 * 8 6 5 24 24 H 1.09004 * 109.46920 * 180.02562 * 8 6 5 25 25 H 1.09002 * 109.47246 * 299.99451 * 8 6 5 26 26 H 0.96998 * 119.99202 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6342 0.0015 6 6 4.7899 -1.5009 0.0029 7 1 4.5313 -2.4666 0.4372 8 6 5.8993 -0.8497 0.8311 9 6 5.2694 -1.6987 -1.4120 10 1 4.7464 -1.2264 -2.2305 11 6 6.3753 -2.4834 -1.6618 12 7 7.0118 -3.0589 -0.6651 13 14 6.9693 -2.7291 -3.4157 14 1 7.9520 -1.6698 -3.7584 15 1 7.6143 -4.0611 -3.5378 16 1 5.8137 -2.6517 -4.3452 17 7 2.2741 -1.0600 0.0005 18 1 -0.3634 0.0003 1.0277 19 1 -0.3634 0.8898 -0.5140 20 1 -0.3634 -0.8902 -0.5136 21 1 1.9923 2.1597 -0.0004 22 1 4.4891 1.3484 0.0011 23 1 5.5524 -0.7066 1.8545 24 1 6.7782 -1.4944 0.8317 25 1 6.1578 0.1160 0.3967 26 1 7.7899 -3.6106 -0.8409 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070685340.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:18 Heat of formation + Delta-G solvation = 63.104143 kcal Electronic energy + Delta-G solvation = -10541.078274 eV Core-core repulsion = 8621.199945 eV Total energy + Delta-G solvation = -1919.878330 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.24233 -34.79141 -32.19305 -29.98477 -29.05463 -26.33475 -25.41423 -21.93476 -19.49497 -18.90992 -16.73329 -15.88904 -14.51444 -14.09173 -13.47923 -13.07464 -12.67998 -12.59538 -12.04297 -11.70052 -11.43552 -11.15246 -10.88078 -10.87056 -10.41183 -10.27692 -9.69750 -9.45028 -8.62646 -8.30460 -7.59944 -6.25327 -4.34808 2.90411 3.20087 3.26767 3.32079 3.54702 3.69189 4.29127 5.05721 5.44126 5.53691 5.88673 5.99702 6.12890 6.29926 6.45095 6.52052 6.64152 6.66971 6.90656 7.24133 7.45707 7.60938 7.71739 7.96061 8.15742 8.68372 8.78368 9.32459 10.79608 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.060200 B = 0.011815 C = 0.010940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.007517 B = 2369.341428 C = 2558.877924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 C -0.303 4.303 4 C 0.060 3.940 5 N -0.323 5.323 6 C 0.274 3.726 7 H 0.060 0.940 8 C -0.150 4.150 9 C -0.530 4.530 10 H 0.063 0.937 11 C 0.067 3.933 12 N -0.889 5.889 13 Si 0.908 3.092 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.273 1.273 17 N -0.302 5.302 18 H 0.065 0.935 19 H 0.067 0.933 20 H 0.064 0.936 21 H 0.132 0.868 22 H 0.162 0.838 23 H 0.021 0.979 24 H 0.106 0.894 25 H 0.039 0.961 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 5.819 1.152 7.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.127 4.127 3 C -0.334 4.334 4 C -0.090 4.090 5 N -0.103 5.103 6 C 0.176 3.824 7 H 0.078 0.922 8 C -0.208 4.208 9 C -0.569 4.569 10 H 0.082 0.918 11 C -0.136 4.136 12 N -0.527 5.527 13 Si 0.735 3.265 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 N -0.127 5.127 18 H 0.084 0.916 19 H 0.086 0.914 20 H 0.083 0.917 21 H 0.150 0.850 22 H 0.179 0.821 23 H 0.040 0.960 24 H 0.124 0.876 25 H 0.058 0.942 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.534 4.293 1.194 6.357 hybrid contribution 0.522 0.802 -0.939 1.341 sum -4.012 5.094 0.255 6.489 Atomic orbital electron populations 1.20002 0.88006 1.02253 1.01828 1.22117 0.96312 0.91376 1.02902 1.21118 0.91978 0.98819 1.21441 1.22353 0.98681 0.86494 1.01483 1.49582 1.05437 1.04776 1.50528 1.19265 0.76906 0.88845 0.97425 0.92179 1.22154 1.01907 1.01037 0.95748 1.21308 1.12731 1.31532 0.91338 0.91849 1.24890 0.95854 0.94718 0.98115 1.69847 1.20137 1.31823 1.30881 0.86330 0.78907 0.77655 0.83648 1.20329 1.20838 1.19726 1.77212 0.87853 1.23111 1.24529 0.91585 0.91396 0.91657 0.85043 0.82087 0.96035 0.87579 0.94223 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.45 36.00 0.38 -0.54 15 2 C 0.04 0.75 7.22 -82.41 -0.59 0.15 15 3 C -0.30 -5.80 10.74 -40.01 -0.43 -6.23 15 4 C 0.06 1.26 10.59 -17.22 -0.18 1.08 15 5 N -0.32 -7.83 3.51 -55.99 -0.20 -8.03 15 6 C 0.27 7.09 3.31 -69.08 -0.23 6.86 15 7 H 0.06 1.70 8.14 -51.93 -0.42 1.28 15 8 C -0.15 -3.46 8.61 37.16 0.32 -3.14 15 9 C -0.53 -14.67 8.84 -34.44 -0.30 -14.98 15 10 H 0.06 1.81 7.81 -52.49 -0.41 1.40 15 11 C 0.07 1.81 5.30 -17.82 -0.09 1.72 15 12 N -0.89 -24.32 11.32 55.43 0.63 -23.69 15 13 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 15 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 15 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 17 N -0.30 -7.25 12.58 33.67 0.42 -6.83 15 18 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 19 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.13 2.07 8.06 -52.49 -0.42 1.64 15 22 H 0.16 2.93 7.26 -52.49 -0.38 2.54 15 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 24 H 0.11 2.64 6.07 -51.93 -0.32 2.32 15 25 H 0.04 0.85 7.16 -51.93 -0.37 0.48 15 26 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 LS Contribution 228.69 15.07 3.45 3.45 Total: -1.00 -29.45 228.69 -5.01 -34.46 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -3.15 Total: -0.27 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -1.14 Total: -15.08 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.85 Total: -38.55 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.45 -5.01 -34.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070685340.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.566 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds